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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('flowCyBar_1.49.0.tar.gz','quit-with-status'=TRUE)"
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── Installing flowCyBar ────────────────────────────────────────────────────────
✔ Package installed successfully
── flowCyBar session metadata ──────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpRKBEtw/file9af972dabba66/flowCyBar
→ BiocVersion: 3.24
→ Package: flowCyBar
→ PackageVersion: 1.49.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/flowCyBar.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpRKBEtw/file9af972dabba66/flowCyBar
→ installDir: /tmp/RtmpRKBEtw/file9af972c59d9d4
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on flowCyBar ──────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.0.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/RtmpRKBEtw/file9af972dabba66/flowCyBar/man/Abiotic_data_sample.Rd'
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/RtmpRKBEtw/file9af972dabba66/flowCyBar/man/Cell_number_sample.Rd'
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/RtmpRKBEtw/file9af972dabba66/flowCyBar/man/nmds.Rd'
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/RtmpRKBEtw/file9af972dabba66/flowCyBar/vignettes/flowCyBar-manual.Rnw'
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • flowCyBar-manual.Rnw
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • flowCyBar-manual.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/flowCyBar-manual.Rnw
* Checking package installation calls in R code...
* Checking for library/require of flowCyBar...
* Checking coding practice...
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/correlation.R (line 5, column 38)
    • ...
    • R/normalize.R (line 22, column 36)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/correlation.Rd
    • ...
    • man/normalize.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 229 lines (15%) are > 80 characters long.
  First few lines:
    • R/correlation.R#L6 definition = function (x,cortype="spearm ...
    • ...
    • vignettes/flowCyBar-manual.Rnw#L770 Typing \texttt{cor["est"]} returns
    the e ...
ℹ NOTE: Consider 4 spaces instead of tabs; 6 lines (0%) contain tabs.
  First few lines:
    • R/cybar_plot.R#L14 breaks=seq(from=from,to=to,length=gra ...
    • ...
    • R/cybar_plot.R#L172 return(boxout) ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 140 lines (9%) are
not.
  First few lines:
    • R/correlation.R#L7 distfun=functio ...
    • ...
    • vignettes/flowCyBar-manual.Rnw#L613 & G1 & ... & G30 & delta\_B1 & del
    ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 3 WARNINGS | ℹ 12 NOTES
ℹ See the flowCyBar.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.