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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('geneAttribution_1.39.0.tar.gz','quit-with-status'=TRUE)"
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── Installing geneAttribution ──────────────────────────────────────────────────
✔ Package installed successfully
── geneAttribution session metadata ────────────────────────────────────────────
→ sourceDir: /tmp/RtmppUUclq/filea2d954e51e91/geneAttribution
→ BiocVersion: 3.24
→ Package: geneAttribution
→ PackageVersion: 1.39.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/geneAttribution.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmppUUclq/filea2d954e51e91/geneAttribution
→ installDir: /tmp/RtmppUUclq/filea2d9576416e52
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on geneAttribution ────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (75%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Vignette(s) still using 'VignetteIndexEntry{Vignette Title}'
  The following files use template defaults:
    • geneAttribution.Rmd
! WARNING: Evaluate more vignette chunks.
ℹ 2 out of 2 code chunks = 100% unevaluated
ℹ 
* Checking package installation calls in R code...
* Checking for library/require of geneAttribution...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...

* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 8 lines (2%) are > 80 characters long.
  First few lines:
    • R/geneAttribution.R#L29 geneModels <- function(txdb=TxDb.Hsapien ...
    • ...
    • vignettes/geneAttribution.Rmd#L94 empirical <- loadBed("INPUT_FILE.bed",
    w ...
ℹ NOTE: Consider 4 spaces instead of tabs; 52 lines (15%) contain tabs.
  First few lines:
    • R/geneAttribution.R#L30 maxGeneLength=1e+06, genesToInc ...
    • ...
    • R/geneAttribution.R#L192 prior <- prior / sum(prior) # Normaliza ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 15 lines (4%) are not.
  First few lines:
    • vignettes/geneAttribution.Rmd#L59 genes to include (e.g. only protein co
    ...
    • ...
    • vignettes/geneAttribution.Rmd#L127 ([GTEx Consortium 2015](http://doi.org
    ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 2 WARNINGS | ℹ 6 NOTES
ℹ See the geneAttribution.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.