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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('proActiv_1.23.0.tar.gz','quit-with-status'=TRUE)"
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── Installing proActiv ─────────────────────────────────────────────────────────
✔ Package installed successfully
── proActiv session metadata ───────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpuRYbn6/file102d1c1a2a2932/proActiv
→ BiocVersion: 3.24
→ Package: proActiv
→ PackageVersion: 1.23.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/proActiv.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpuRYbn6/file102d1c1a2a2932/proActiv
→ installDir: /tmp/RtmpuRYbn6/file102d1c4efd58
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on proActiv ───────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.0.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (52%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of proActiv...
* Checking coding practice...
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/annotation-data-helper.R (line 301, column 18)
    • ...
    • R/proActiv.R (line 247, column 17)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/annotation-data-helper.R (line 301, column 25)
    • ...
    • R/proActiv.R (line 154, column 18)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 3
functions greater than 50 lines.
  The longest 5 functions are:
    • preparePromoterAnnotation() (R/annotation-data.R): 100 lines
    • plotHeatmap() (R/plot-proActiv.R): 62 lines
    • getAlternativePromoters() (R/identify-alternative-promoters.R): 51 lines
* Checking man page documentation...
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • reexports.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 88 lines (4%) are > 80 characters long.
  First few lines:
    • R/annotation-data.R#L61 txId.all <- transcriptRanges$TXID[ma ...
    • ...
    • vignettes/proActiv.Rmd#L297 [Demircioğlu, Deniz, et al. "A Pan-cance ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 61 lines (3%) are not.
  First few lines:
    • R/estimate-promoter-activity.R#L46 ...
    • ...
    • vignettes/proActiv.Rmd#L284 unique(condition), pch = c(24,24) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 0 WARNINGS | ℹ 12 NOTES
ℹ See the proActiv.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.