Build/check report for BioC 3.24 - BIOCCHECK results for randRotation on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4890
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*
BIOCCHECK results for randRotation on nebbiolo2

To the developers/maintainers of the randRotation package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/randRotation.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
raw results
Summary

Package: randRotation
Version: 1.25.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('randRotation_1.25.0.tar.gz','quit-with-status'=TRUE)"
StartedAt: 2026-05-09 07:28:36 -0400 (Sat, 09 May 2026)
EndedAt: 2026-05-09 07:28:55 -0400 (Sat, 09 May 2026)
EllapsedTime: 19.0 seconds
RetCode: 0
Status: WARNINGS
CheckDir: None
Warnings: 2
Command output

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('randRotation_1.25.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################


── Installing randRotation ─────────────────────────────────────────────────────
✔ Package installed successfully
── randRotation session metadata ───────────────────────────────────────────────
→ sourceDir: /tmp/RtmpbxUkP0/file1073d723992d6/randRotation
→ BiocVersion: 3.24
→ Package: randRotation
→ PackageVersion: 1.25.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/randRotation.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpbxUkP0/file1073d723992d6/randRotation
→ installDir: /tmp/RtmpbxUkP0/file1073d74f0cba36
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on randRotation ───────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • randRotationIntro.Rmd
* Checking package installation calls in R code...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:32: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:54: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:81: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:82: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:100: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:124: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:200: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:19: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:40: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:47: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:133: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:31: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:49: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:95: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:15: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:18: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:49: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:107: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:40: unknown macro '\insertAllCited'
* Checking for library/require of randRotation...
* Checking coding practice...
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/randRot.R (line 504, column 5)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/randRot.R (line 71, column 50)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/randRot.R (line 233, column 15)
    • R/randRot.R (line 235, column 15)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
  The longest 5 functions are:
    • initRandrot() (R/randRot.R): 106 lines
* Checking man page documentation...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:32: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:54: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:81: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:82: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:100: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:124: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:200: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:19: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:40: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:47: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:133: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:31: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:49: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:95: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:15: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:18: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:49: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:107: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:40: unknown macro '\insertAllCited'
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/randRotation-defunct.Rd
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:32: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:54: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:81: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:82: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:100: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:124: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:200: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:19: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:40: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:47: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:133: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:31: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:49: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:95: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:15: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:18: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:49: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:107: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:40: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:32: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/fdr_p.Rd:54: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:81: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:82: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:88: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:100: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:124: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/initRandrot.Rd:200: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:19: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:40: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:47: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/pFdr.Rd:133: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:31: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randorth.Rd:49: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:48: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randrot.Rd:95: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:15: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/randRotation-package.Rd:18: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:49: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/rotateStat.Rd:107: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:33: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpbxUkP0/file1073d723992d6/randRotation/man/X_decomp.Rd:40: unknown macro '\insertAllCited'
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 5% of man
pages use at least one of these tags.
  Found in files:
    • initRandrot.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • initRandrot.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 143 lines (7%) are > 80 characters long.
  First few lines:
    • R/randRot.R#L31 #' (\code{H0} and error columns), see \c ...
    • ...
    • vignettes/randRotationIntro.Rmd#L575 me1 <- nlme::lme(d1 ~ tissue, data =
    ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 304 lines (14%) are
not.
  First few lines:
    • R/randRot.R#L45 qrX <- qr(X) ...
    • ...
    • vignettes/randRotationIntro.Rmd#L583 batch = pdata$batch, m ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 2 WARNINGS | ℹ 11 NOTES
ℹ See the randRotation.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.