Build/check report for BioC 3.24 - BIOCCHECK results for rexposome on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4890
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BIOCCHECK results for rexposome on nebbiolo2

To the developers/maintainers of the rexposome package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rexposome.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: rexposome

Version: 1.35.0

Command: /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('rexposome_1.35.0.tar.gz','quit-with-status'=TRUE)"

StartedAt: 2026-05-09 07:31:27 -0400 (Sat, 09 May 2026)

EndedAt: 2026-05-09 07:32:05 -0400 (Sat, 09 May 2026)

EllapsedTime: 38.0 seconds

RetCode: 1

Status: ERRORS

CheckDir: None

Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('rexposome_1.35.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################


── Installing rexposome ────────────────────────────────────────────────────────
✔ Package installed successfully
── rexposome session metadata ──────────────────────────────────────────────────
→ sourceDir: /tmp/Rtmp5VJAB9/file11a5c265ea3c/rexposome
→ BiocVersion: 3.24
→ Package: rexposome
→ PackageVersion: 1.35.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/rexposome.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmp5VJAB9/file11a5c265ea3c/rexposome
→ installDir: /tmp/Rtmp5VJAB9/file11a5c2c612f67
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on rexposome ──────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.5 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (7%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • mutiple_imputation_data_analysis.Rmd
* Checking package installation calls in R code...
Error in parse(outfile, keep.source = TRUE) : 
  /tmp/Rtmp5VJAB9/file11a5c2385ca26b/parseFile.tmp:21:0: unexpected end of input
19: 
20: 
   ^
Calls: <Anonymous> -> BiocCheckRun -> parseFiles -> parseFile -> parse
Execution halted