Build/check report for BioC 3.24 - BIOCCHECK results for rprimer on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4890
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*
BIOCCHECK results for rprimer on nebbiolo2

To the developers/maintainers of the rprimer package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rprimer.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
raw results
Summary

Package: rprimer
Version: 1.17.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('rprimer_1.17.0.tar.gz','quit-with-status'=TRUE)"
StartedAt: 2026-05-09 07:35:00 -0400 (Sat, 09 May 2026)
EndedAt: 2026-05-09 07:35:45 -0400 (Sat, 09 May 2026)
EllapsedTime: 45.0 seconds
RetCode: 0
Status: WARNINGS
CheckDir: None
Warnings: 1
Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('rprimer_1.17.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################


── Installing rprimer ──────────────────────────────────────────────────────────
✔ Package installed successfully
── rprimer session metadata ────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer
→ BiocVersion: 3.24
→ Package: rprimer
→ PackageVersion: 1.17.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/rprimer.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer
→ installDir: /tmp/RtmpMrhXhG/file123f0d1e42f311
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on rprimer ────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.1 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (23%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • getting-started-with-rprimer.Rmd
* Checking package installation calls in R code...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:164: unknown macro '\loadmathjax'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:172: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:186: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
* Checking for library/require of rprimer...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 1 times)
  • suppressMessages() in R/plotData.R (line 703, column 10)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 23
functions greater than 50 lines.
  The longest 5 functions are:
    • assayFilterServer() (R/shiny-module-assay_filter.R): 775 lines
    • ...
    • oligoServer() (R/shiny-module-oligo.R): 334 lines
* Checking man page documentation...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:164: unknown macro '\loadmathjax'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:172: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:186: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:164: unknown macro '\loadmathjax'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:172: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:186: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:164: unknown macro '\loadmathjax'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:165: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:167: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:168: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:172: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:179: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:181: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mjsdeqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\cdot'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\log'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:184: unknown macro '\mathrm'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:186: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\mjseqn'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpMrhXhG/file123f0d76826c85/rprimer/man/designOligos.Rd:190: unknown macro '\Delta'
* Checking package NEWS...
! WARNING: news(package='rprimer') failed with news file:
rprimer/NEWS.md:news() failed to parse news file: rprimer/NEWS.md Refer to
https://contributions.bioconductor.org/news.html to be included in Bioconductor
release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 169 lines (2%) are > 80 characters long.
  First few lines:
    • R/datasets.R#L10 #' \item \code{exampleRprimerAlignment} ...
    • ...
    • vignettes/getting-started-with-rprimer.Rmd#L525 Persson S., Larsson C.,
    Simonsson M., El ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 186 lines (3%) are
not.
  First few lines:
    • R/designOligos.R#L278 maxGapFrequency ...
    • ...
    • vignettes/getting-started-with-rprimer.Rmd#L399 scroll_box(width =
    "650px") ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 1 WARNINGS | ℹ 8 NOTES
ℹ See the rprimer.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.