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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('singscore_1.33.0.tar.gz','quit-with-status'=TRUE)"
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── Installing singscore ────────────────────────────────────────────────────────
✔ Package installed successfully
── singscore session metadata ──────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpnfUp1o/file13300a34cd1c20/singscore
→ BiocVersion: 3.24
→ Package: singscore
→ PackageVersion: 1.33.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/singscore.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpnfUp1o/file13300a34cd1c20/singscore
→ installDir: /tmp/RtmpnfUp1o/file13300a60ca028d
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on singscore ──────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.6 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]],  :
  It is recommended to use ‘given’ instead of ‘middle’.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (30%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]],  :
  It is recommended to use ‘given’ instead of ‘middle’.
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • singscore.Rmd
* Checking package installation calls in R code...
* Checking for library/require of singscore...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/multiScoreGeneric.R (line 163, column 15)
    • ...
    • R/rankAndScoring.R (line 299, column 19)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • permuTest.R (line 76, column 31)
    • permuTest.R (line 83, column 39)
    • permuTest.R (line 88, column 45)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/multiScoreGeneric.R (line 60, column 11)
    • ...
    • R/stableGenes.R (line 46, column 9)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 7
functions greater than 50 lines.
  The longest 5 functions are:
    • multiSingscore() (R/rankAndScoring.R): 122 lines
    • ...
    • plotDispersion() (R/plot.R): 81 lines
* Checking man page documentation...
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • projectScoreLandscape.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 4% of man
pages use at least one of these tags.
  Found in files:
    • rankGenes.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • rankGenes.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 78 lines (3%) are > 80 characters long.
  First few lines:
    • R/generatNullGeneric.R#L29 #' [Post about BiocParallel](http://lcol ...
    • ...
    • vignettes/singscore.Rmd#L364 `scoredf_tcga_epi` and `scoredf_tcga ...
ℹ NOTE: Consider 4 spaces instead of tabs; 7 lines (0%) contain tabs.
  First few lines:
    • R/plot.R#L40 #a column name has been specified, ex ...
    • ...
    • R/plot.R#L490 stat_density(aes(y = after_stat(densi ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 793 lines (30%) are
not.
  First few lines:
    • R/generatNullGeneric.R#L44 function(upSet, ...
    • ...
    • vignettes/singscore.Rmd#L301 ) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 0 WARNINGS | ℹ 15 NOTES
ℹ See the singscore.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.