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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('spatialFDA_1.5.0.tar.gz','quit-with-status'=TRUE)"
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── Installing spatialFDA ───────────────────────────────────────────────────────
✔ Package installed successfully
── spatialFDA session metadata ─────────────────────────────────────────────────
→ sourceDir: /tmp/Rtmp4MLcdm/file1448a957e8c8e/spatialFDA
→ BiocVersion: 3.24
→ Package: spatialFDA
→ PackageVersion: 1.5.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/spatialFDA.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmp4MLcdm/file1448a957e8c8e/spatialFDA
→ installDir: /tmp/Rtmp4MLcdm/file1448a93b7a45d0
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on spatialFDA ─────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.3.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews:
PrincipalComponent
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (21%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • DiabetesIsletExample.Rmd
    • DiabetesIsletExampleBrief.Rmd
* Checking package installation calls in R code...
* Checking for library/require of spatialFDA...
* Checking coding practice...
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/funcGam.R (line 101, column 18)
    • ...
    • R/utils.R (line 23, column 12)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/calcMetric.R (line 229, column 12)
    • ...
    • R/spatialInference.R (line 293, column 15)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 5
functions greater than 50 lines.
  The longest 5 functions are:
    • spatialInference() (R/spatialInference.R): 327 lines
    • ...
    • functionalGam() (R/funcGam.R): 55 lines
* Checking man page documentation...
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • plotCrossFOV.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 105 lines (4%) are > 80 characters long.
  First few lines:
    • R/calcMetric.R#L47 stopifnot("Window size must be great ...
    • ...
    • vignettes/DiabetesIsletExampleBrief.Rmd#L262 In these model diagnostics,
    we note that ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 376 lines (14%) are
not.
  First few lines:
    • R/calcMetric.R#L48 =spatstat.geom::boundingra ...
    • ...
    • vignettes/DiabetesIsletExampleBrief.Rmd#L242 shift = mdl$coefficient ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 0 WARNINGS | ℹ 10 NOTES
ℹ See the spatialFDA.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.