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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('tidySummarizedExperiment_1.23.0.tar.gz','quit-with-status'=TRUE)"
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── Installing tidySummarizedExperiment ─────────────────────────────────────────
✔ Package installed successfully
── tidySummarizedExperiment session metadata ───────────────────────────────────
→ sourceDir: /tmp/Rtmp5iZiXf/file14c67f7374f00e/tidySummarizedExperiment
→ BiocVersion: 3.24
→ Package: tidySummarizedExperiment
→ PackageVersion: 1.23.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/tidySummarizedExperiment.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmp5iZiXf/file14c67f7374f00e/tidySummarizedExperiment
→ installDir: /tmp/Rtmp5iZiXf/file14c67f7d98ce1b
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on tidySummarizedExperiment ───────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.3.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: Coverage
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (13%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • introduction.Rmd
* Checking package installation calls in R code...
* Checking for library/require of tidySummarizedExperiment...
! WARNING: Avoid the use of 'library' or 'require' in R code
  Found in files:
    • library() in R/attach.R (line 13, column 5)
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/filter.R (line 38, column 27)
    • ...
    • R/utilities.R (line 962, column 9)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • dplyr_methods.R (line 525, column 19)
    • ...
    • utilities.R (line 1079, column 7)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/dplyr_methods.R (line 125, column 25)
    • ...
    • R/utilities.R (line 1254, column 24)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/join.R (line 179, column 13)
! WARNING: .Deprecated / .Defunct usage (found 2 times)
  • deprecate_warn() in R/dplyr_methods.R (line 19, column 16)
  • deprecate_warn() in R/methods.R (line 28, column 5)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 12 times)
  • suppressMessages() in R/dplyr_methods.R (line 130, column 9)
  • ...
  • suppressWarnings() in R/utilities.R (line 948, column 5)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 24
functions greater than 50 lines.
  The longest 5 functions are:
    • unnest_summarized_experiment() (R/tidyr_methods.R): 154 lines
    • ...
    • nest.SummarizedExperiment() (R/tidyr_methods.R): 124 lines
* Checking man page documentation...
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 273 lines (5%) are > 80 characters long.
  First few lines:
    • R/data.R#L8 #' @source \url{https://bioconductor.org ...
    • ...
    • vignettes/introduction.Rmd#L225 axis.title.x=element_tex ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 1185 lines (22%) are
not.
  First few lines:
    • R/decompose_tidy_operations.R#L28 ...
    • ...
    • vignettes/introduction.Rmd#L72 } ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 2 WARNINGS | ℹ 16 NOTES
ℹ See the tidySummarizedExperiment.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.