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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('vidger_1.33.0.tar.gz','quit-with-status'=TRUE)"
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── Installing vidger ───────────────────────────────────────────────────────────
✔ Package installed successfully
── vidger session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpLHHdga/file1529af19aebee5/vidger
→ BiocVersion: 3.24
→ Package: vidger
→ PackageVersion: 1.33.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/vidger.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpLHHdga/file1529af19aebee5/vidger
→ installDir: /tmp/RtmpLHHdga/file1529af1210b90a
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on vidger ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.5 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (29%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • vidger.Rmd
* Checking package installation calls in R code...
* Checking for library/require of vidger...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/vsBoxPlot-house-keeping.R (line 18, column 19)
    • ...
    • R/vsScatterMatrix-house-keeping.R (line 60, column 23)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • print() in R/vsBoxPlot.R (line 249, column 9)
    • ...
    • print() in R/vsVolcanoMatrix.R (line 238, column 9)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/vsDEGmat.R (line 147, column 14)
    • ...
    • R/vsVolcanoMatrix.R (line 144, column 13)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/vsBoxPlot.R (line 119, column 13)
    • ...
    • R/vsVolcanoMatrix.R (line 102, column 13)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 10
functions greater than 50 lines.
  The longest 5 functions are:
    • vsFourWay() (R/vsFourWay.R): 156 lines
    • ...
    • vsVolcano() (R/vsVolcano.R): 145 lines
* Checking man page documentation...
! WARNING: Empty or missing \format sections found in data man page(s).
  Found in files:
    • man/df.cuff.Rd
    • man/df.deseq.Rd
    • man/df.edger.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 3 lines (0%) are > 80 characters long.
  First few lines:
    • R/vsVolcanoMatrix.R#L156 do.call('rbind', strsplit(as.cha ...
    • vignettes/vidger.Rmd#L73 [Bioconductor](https://bioconductor.org/ ...
    • vignettes/vidger.Rmd#L326 [package.](https://cran.r-project.org/we ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 183 lines (4%) are
not.
  First few lines:
    • R/vsMAMatrix.R#L106 data, d.factor = NULL, type = c("cuff ...
    • ...
    • vignettes/vidger.Rmd#L1278 percentile. ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 1 WARNINGS | ℹ 12 NOTES
ℹ See the vidger.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.