| Back to Build/check report for BioC 3.21 annotations |
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This page was generated on 2025-03-19 08:30 -0400 (Wed, 19 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4775 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 22/47 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| EuPathDB 1.0.1 (landing page) Keith Hughitt
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
|
To the developers/maintainers of the EuPathDB package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: EuPathDB |
| Version: 1.0.1 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EuPathDB |
| StartedAt: 2025-03-19 06:31:24 -0400 (Wed, 19 Mar 2025) |
| EndedAt: 2025-03-19 06:32:16 -0400 (Wed, 19 Mar 2025) |
| EllapsedTime: 52.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EuPathDB
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* checking for file ‘EuPathDB/DESCRIPTION’ ... OK
* preparing ‘EuPathDB’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EuPathDB.Rmd’ using rmarkdown
Quitting from EuPathDB.Rmd:112-115 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! AH65089 is an OrgDb resource.
orgDb resources are generated for specific biocversions.
Requested resource works with biocversion: 3.8
To find a resource appropriate for your biocversion try the following query:
query(ah,'Leishmania major strain Friedlin genome wide annotations')
---
Backtrace:
▆
1. ├─res[["AH65089"]]
2. └─res[["AH65089"]]
3. └─AnnotationHub (local) .local(x, i, j = j, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'EuPathDB.Rmd' failed with diagnostics:
AH65089 is an OrgDb resource.
orgDb resources are generated for specific biocversions.
Requested resource works with biocversion: 3.8
To find a resource appropriate for your biocversion try the following query:
query(ah,'Leishmania major strain Friedlin genome wide annotations')
--- failed re-building ‘EuPathDB.Rmd’
SUMMARY: processing the following file failed:
‘EuPathDB.Rmd’
Error: Vignette re-building failed.
Execution halted