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This page was generated on 2026-05-05 15:41 -0400 (Tue, 05 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4844
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Package 53/434HostnameOS / ArchINSTALLBUILDCHECK
ChAMPdata 2.45.0  (landing page)
Yuan Tian
Snapshot Date: 2026-05-05 08:30 -0400 (Tue, 05 May 2026)
git_url: https://git.bioconductor.org/packages/ChAMPdata
git_branch: devel
git_last_commit: 5956fab
git_last_commit_date: 2026-04-28 08:26:22 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published


CHECK results for ChAMPdata on nebbiolo2

To the developers/maintainers of the ChAMPdata package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ChAMPdata
Version: 2.45.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings ChAMPdata_2.45.0.tar.gz
StartedAt: 2026-05-05 12:05:36 -0400 (Tue, 05 May 2026)
EndedAt: 2026-05-05 12:11:00 -0400 (Tue, 05 May 2026)
EllapsedTime: 323.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: ChAMPdata.Rcheck
Warnings: 1

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings ChAMPdata_2.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.24-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-05 16:05:50 UTC
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘2.45.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 730.0Mb
  sub-directories of 1Mb or more:
    data     606.3Mb
    extdata  123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Failed with error:  'there is no package called 'minfi''
  Error loading dataset 'bloodCtl':
   Error in .requirePackage(package) : 
    unable to load required package 'minfi'
  
  Failed with error:  'there is no package called 'minfi''
  Error loading dataset 'myLoad':
   Error in .requirePackage(package) : 
    unable to load required package 'minfi'
  
  The dataset(s) may use package(s) not declared in Depends/Imports.
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
ChAMPdata-package  37.601  0.816  38.418
testDataSet         9.908  0.163  10.072
EPIC.manifest.hg19  5.688  0.276   5.965
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.24-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.


Installation output

ChAMPdata.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL ChAMPdata
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’
* installing *source* package ‘ChAMPdata’ ...
** this is package ‘ChAMPdata’ version ‘2.45.0’
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ChAMPdata)

Tests output


Example timings

ChAMPdata.Rcheck/ChAMPdata-Ex.timings

nameusersystemelapsed
Anno450K2.9510.0563.007
AnnoEPIC4.2540.0764.330
CellTypeMeans27K0.0020.0000.002
CellTypeMeans450K0.0020.0000.002
ChAMPdata-package37.601 0.81638.418
ControlProbes450K0.0010.0000.001
ControlProbesEPIC0.0010.0000.001
EPIC.manifest.hg195.6880.2765.965
EPIC.manifest.pop.hg193.7010.1293.831
EPICSimData2.2040.0262.231
MatchGeneName0.0210.0000.021
PathwayList0.4060.0030.409
bloodCtl0.0010.0000.001
hm450.manifest.hg191.9570.0391.996
hm450.manifest.pop.hg191.1130.0101.123
hprdAsigH2.2510.4062.656
illumina450Gr3.5970.0833.681
illuminaEPICGr4.1700.0194.190
multi.hit0.8140.0040.818
probe.features0.6500.0110.661
probe.features.epic1.6520.0221.674
probeInfoALL.epic.lv0.8010.0090.810
probeInfoALL.lv0.5030.0010.505
snp.hit0.8060.0010.808
testDataSet 9.908 0.16310.072