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This page was generated on 2026-02-19 15:01 -0500 (Thu, 19 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4868
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 82/433HostnameOS / ArchINSTALLBUILDCHECK
curatedMetagenomicData 3.19.0  (landing page)
Lucas schiffer
Snapshot Date: 2026-02-19 07:00 -0500 (Thu, 19 Feb 2026)
git_url: https://git.bioconductor.org/packages/curatedMetagenomicData
git_branch: devel
git_last_commit: 5cacdd9
git_last_commit_date: 2025-10-29 09:58:35 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for curatedMetagenomicData on nebbiolo1

To the developers/maintainers of the curatedMetagenomicData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: curatedMetagenomicData
Version: 3.19.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedMetagenomicData
StartedAt: 2026-02-19 11:12:17 -0500 (Thu, 19 Feb 2026)
EndedAt: 2026-02-19 11:14:03 -0500 (Thu, 19 Feb 2026)
EllapsedTime: 105.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedMetagenomicData
###
##############################################################################
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* checking for file ‘curatedMetagenomicData/DESCRIPTION’ ... OK
* preparing ‘curatedMetagenomicData’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘curatedMetagenomicData.Rmd’ using rmarkdown

Quitting from curatedMetagenomicData.Rmd:212-214 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BiocFileCache::bfcdownload()`:
! !missing(rid) is not TRUE
---
Backtrace:
    ▆
 1. └─OmicsMLRepoR::getMetadata("cMD")
 2.   └─OmicsMLRepoR:::s2p_cached_url(fpath)
 3.     ├─BiocFileCache::bfcdownload(bfc, rids = rid, ask = ask_on_update)
 4.     └─BiocFileCache::bfcdownload(bfc, rids = rid, ask = ask_on_update)
 5.       └─base::stopifnot(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'curatedMetagenomicData.Rmd' failed with diagnostics:
!missing(rid) is not TRUE
--- failed re-building ‘curatedMetagenomicData.Rmd’

SUMMARY: processing the following file failed:
  ‘curatedMetagenomicData.Rmd’

Error: Vignette re-building failed.
Execution halted