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This page was generated on 2025-03-25 15:01 -0400 (Tue, 25 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4783
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Package 83/432HostnameOS / ArchINSTALLBUILDCHECK
curatedMetagenomicData 3.15.0  (landing page)
Lucas schiffer
Snapshot Date: 2025-03-25 07:30 -0400 (Tue, 25 Mar 2025)
git_url: https://git.bioconductor.org/packages/curatedMetagenomicData
git_branch: devel
git_last_commit: c2fbd63
git_last_commit_date: 2024-10-29 09:45:44 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for curatedMetagenomicData on nebbiolo1

To the developers/maintainers of the curatedMetagenomicData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: curatedMetagenomicData
Version: 3.15.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedMetagenomicData
StartedAt: 2025-03-25 11:11:38 -0400 (Tue, 25 Mar 2025)
EndedAt: 2025-03-25 11:13:55 -0400 (Tue, 25 Mar 2025)
EllapsedTime: 136.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedMetagenomicData
###
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* checking for file ‘curatedMetagenomicData/DESCRIPTION’ ... OK
* preparing ‘curatedMetagenomicData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘curatedMetagenomicData.Rmd’ using rmarkdown

Quitting from curatedMetagenomicData.Rmd:226-229 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'x' has nrow(x) == 0L.
---
Backtrace:
     ▆
  1. └─mia::splitByRanks(alcoholStudy)
  2.   ├─base::do.call(agglomerateByRanks, args)
  3.   ├─mia (local) `<stndrdGn>`(as.list = TRUE, x = `<TrSmmrzE[,702]>`)
  4.   └─mia (local) `<stndrdGn>`(as.list = TRUE, x = `<TrSmmrzE[,702]>`)
  5.     └─mia (local) .local(x, ...)
  6.       ├─methods::callNextMethod()
  7.       └─mia (local) .nextMethod(x = x, as.list = as.list)
  8.         └─mia (local) .local(x, ...)
  9.           ├─methods::callNextMethod()
 10.           └─mia (local) .nextMethod(x = x, as.list = as.list)
 11.             └─mia (local) .local(x, ...)
 12.               └─mia:::.split_by_ranks(x, ranks = ranks, args)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'curatedMetagenomicData.Rmd' failed with diagnostics:
'x' has nrow(x) == 0L.
--- failed re-building ‘curatedMetagenomicData.Rmd’

SUMMARY: processing the following file failed:
  ‘curatedMetagenomicData.Rmd’

Error: Vignette re-building failed.
Execution halted