Back to Workflows build report for BioC 3.23

This page was generated on 2025-12-16 16:30 -0500 (Tue, 16 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4875
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4623
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 18/28HostnameOS / ArchINSTALLBUILD
recountWorkflow 1.35.0  (landing page)
Leonardo Collado-Torres
Snapshot Date: 2025-12-16 12:45 -0500 (Tue, 16 Dec 2025)
git_url: https://git.bioconductor.org/packages/recountWorkflow
git_branch: devel
git_last_commit: 5dea0c6
git_last_commit_date: 2025-10-29 09:46:52 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK  

BUILD results for recountWorkflow on nebbiolo1

To the developers/maintainers of the recountWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: recountWorkflow
Version: 1.35.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountWorkflow
StartedAt: 2025-12-16 13:06:04 -0500 (Tue, 16 Dec 2025)
EndedAt: 2025-12-16 13:06:26 -0500 (Tue, 16 Dec 2025)
EllapsedTime: 22.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountWorkflow
###
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* checking for file ‘recountWorkflow/DESCRIPTION’ ... OK
* preparing ‘recountWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘recountWorkflow’ ...
** this is package ‘recountWorkflow’ version ‘1.35.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: object ‘load_OrgDb’ is not exported by 'namespace:GOSemSim'
Execution halted
ERROR: lazy loading failed for package ‘recountWorkflow’
* removing ‘/tmp/RtmpBShhHL/Rinst1e02452b80bae6/recountWorkflow’
      -----------------------------------
ERROR: package installation failed