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This page was generated on 2025-03-20 12:12 -0400 (Thu, 20 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4756
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4487
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4514
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4441
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4406
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 708/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FELLA 1.26.0  (landing page)
Sergio Picart-Armada
Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025)
git_url: https://git.bioconductor.org/packages/FELLA
git_branch: RELEASE_3_20
git_last_commit: f61c33f
git_last_commit_date: 2024-10-29 10:26:25 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for FELLA on taishan

To the developers/maintainers of the FELLA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FELLA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: FELLA
Version: 1.26.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data FELLA
StartedAt: 2025-03-18 00:56:02 -0000 (Tue, 18 Mar 2025)
EndedAt: 2025-03-18 01:19:18 -0000 (Tue, 18 Mar 2025)
EllapsedTime: 1395.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data FELLA
###
##############################################################################
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* checking for file ‘FELLA/DESCRIPTION’ ... OK
* preparing ‘FELLA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘musmusculus.Rmd’ using rmarkdown
Warning: LaTeX Warning: You have requested package `/home/biocbuild/R/R-4.4.3/site-libra
Warning: ry/BiocStyle/resources/tex/Bioconductor',
Warning:                but the package provides `Bioconductor'.
--- finished re-building ‘musmusculus.Rmd’

--- re-building ‘quickstart.Rmd’ using rmarkdown
--- finished re-building ‘quickstart.Rmd’

--- re-building ‘zebrafish.Rmd’ using rmarkdown
Warning: LaTeX Warning: You have requested package `/home/biocbuild/R/R-4.4.3/site-libra
Warning: ry/BiocStyle/resources/tex/Bioconductor',
Warning:                but the package provides `Bioconductor'.
--- finished re-building ‘zebrafish.Rmd’

--- re-building ‘FELLA.Rnw’ using Sweave
Building through KEGGREST...

Error: processing vignette 'FELLA.Rnw' failed with diagnostics:
 chunk 2 (label = 01_graph) 
Error in curl::curl_fetch_memory(url, handle = handle) : 
  Timeout was reached [rest.kegg.jp]: Send failure: Broken pipe

--- failed re-building ‘FELLA.Rnw’

SUMMARY: processing the following file failed:
  ‘FELLA.Rnw’

Error: Vignette re-building failed.
Execution halted