| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-29 10:15 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4694 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1028/2415 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.18.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz |
| StartedAt: 2026-04-29 01:23:35 -0400 (Wed, 29 Apr 2026) |
| EndedAt: 2026-04-29 01:38:45 -0400 (Wed, 29 Apr 2026) |
| EllapsedTime: 909.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-29 05:23:36 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 35.773 0.477 36.255
FSmethod 33.984 0.565 34.558
var_imp 33.465 0.535 34.012
pred_ensembel 13.184 0.130 11.950
enrichfindP 0.529 0.043 11.192
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.18.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 102.017110
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 99.835347
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.170406
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 101.277487
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 94.348497
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 110.948381
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 105.319200
iter 10 value 93.001215
iter 20 value 92.762419
iter 30 value 92.674752
iter 40 value 92.672475
iter 40 value 92.672474
iter 40 value 92.672474
final value 92.672474
converged
Fitting Repeat 3
# weights: 305
initial value 95.805297
final value 93.904720
converged
Fitting Repeat 4
# weights: 305
initial value 97.960121
final value 93.869755
converged
Fitting Repeat 5
# weights: 305
initial value 141.051482
iter 10 value 94.052912
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 109.779560
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 96.188471
final value 93.915747
converged
Fitting Repeat 3
# weights: 507
initial value 140.201616
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 115.483610
iter 10 value 93.915746
iter 10 value 93.915746
iter 10 value 93.915746
final value 93.915746
converged
Fitting Repeat 5
# weights: 507
initial value 95.390308
iter 10 value 93.318066
final value 93.288028
converged
Fitting Repeat 1
# weights: 103
initial value 95.659306
iter 10 value 94.002369
iter 20 value 90.896897
iter 30 value 88.054685
iter 40 value 84.605351
iter 50 value 83.508157
iter 60 value 83.487863
iter 70 value 81.746565
iter 80 value 81.698012
iter 90 value 81.147995
iter 100 value 80.989409
final value 80.989409
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.532797
iter 10 value 94.055107
iter 20 value 93.886553
iter 30 value 89.854563
iter 40 value 84.802138
iter 50 value 84.207206
iter 60 value 84.083953
iter 70 value 83.405916
iter 80 value 82.825475
iter 90 value 82.709182
iter 100 value 82.707702
final value 82.707702
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.096444
iter 10 value 93.989416
iter 20 value 93.945112
iter 30 value 93.545527
iter 40 value 86.197307
iter 50 value 85.446246
iter 60 value 85.426308
iter 70 value 84.996820
iter 80 value 83.062544
iter 90 value 82.738156
iter 100 value 82.716239
final value 82.716239
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.883384
iter 10 value 93.206430
iter 20 value 85.621858
iter 30 value 85.324415
iter 40 value 84.981412
iter 50 value 83.493151
iter 60 value 82.650843
iter 70 value 82.308991
iter 80 value 82.304853
final value 82.304827
converged
Fitting Repeat 5
# weights: 103
initial value 100.154430
iter 10 value 93.715700
iter 20 value 89.118604
iter 30 value 85.509472
iter 40 value 83.718820
iter 50 value 82.581967
iter 60 value 82.382729
iter 70 value 82.108903
iter 80 value 82.031502
iter 90 value 81.955906
final value 81.954273
converged
Fitting Repeat 1
# weights: 305
initial value 111.801600
iter 10 value 94.049795
iter 20 value 92.326113
iter 30 value 86.141087
iter 40 value 83.923398
iter 50 value 83.026018
iter 60 value 82.032141
iter 70 value 81.066457
iter 80 value 80.737658
iter 90 value 80.582834
iter 100 value 80.448973
final value 80.448973
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 119.811142
iter 10 value 93.994473
iter 20 value 85.157408
iter 30 value 82.585695
iter 40 value 82.135795
iter 50 value 81.962625
iter 60 value 81.820017
iter 70 value 81.802880
iter 80 value 81.797710
iter 90 value 81.794317
iter 100 value 81.774735
final value 81.774735
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.763798
iter 10 value 94.006489
iter 20 value 88.549141
iter 30 value 83.137283
iter 40 value 82.324728
iter 50 value 80.875706
iter 60 value 80.586664
iter 70 value 79.911142
iter 80 value 79.379833
iter 90 value 79.283139
iter 100 value 79.201300
final value 79.201300
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.885853
iter 10 value 94.625849
iter 20 value 91.040480
iter 30 value 84.131516
iter 40 value 82.989020
iter 50 value 82.628168
iter 60 value 81.409715
iter 70 value 81.028109
iter 80 value 80.851662
iter 90 value 80.807413
iter 100 value 80.702537
final value 80.702537
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.916715
iter 10 value 86.793076
iter 20 value 85.464800
iter 30 value 85.191638
iter 40 value 84.023165
iter 50 value 83.134321
iter 60 value 80.953105
iter 70 value 80.644911
iter 80 value 80.336616
iter 90 value 79.748219
iter 100 value 79.442407
final value 79.442407
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 139.219278
iter 10 value 94.089060
iter 20 value 90.109044
iter 30 value 86.594073
iter 40 value 85.431361
iter 50 value 82.713081
iter 60 value 81.944895
iter 70 value 81.667168
iter 80 value 80.871937
iter 90 value 79.752692
iter 100 value 79.272038
final value 79.272038
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.903850
iter 10 value 96.363001
iter 20 value 94.624665
iter 30 value 92.977672
iter 40 value 88.879378
iter 50 value 87.831245
iter 60 value 84.064952
iter 70 value 80.800492
iter 80 value 80.287231
iter 90 value 80.103694
iter 100 value 80.030576
final value 80.030576
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.397729
iter 10 value 94.331125
iter 20 value 88.454582
iter 30 value 83.738216
iter 40 value 82.957606
iter 50 value 82.017534
iter 60 value 81.757426
iter 70 value 81.630799
iter 80 value 81.446787
iter 90 value 80.611335
iter 100 value 80.149058
final value 80.149058
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 121.874791
iter 10 value 97.298024
iter 20 value 92.663359
iter 30 value 91.950131
iter 40 value 83.695592
iter 50 value 82.040199
iter 60 value 80.639329
iter 70 value 80.263745
iter 80 value 79.845629
iter 90 value 79.534237
iter 100 value 79.435846
final value 79.435846
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 121.993927
iter 10 value 93.924121
iter 20 value 91.296586
iter 30 value 89.843718
iter 40 value 87.995794
iter 50 value 83.834237
iter 60 value 82.994524
iter 70 value 81.685223
iter 80 value 80.558735
iter 90 value 80.292085
iter 100 value 80.121211
final value 80.121211
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.160223
iter 10 value 92.542247
iter 20 value 84.368289
iter 30 value 84.352443
iter 40 value 84.338787
iter 50 value 84.272602
iter 60 value 84.257305
iter 70 value 84.184215
iter 80 value 83.869706
iter 90 value 83.858464
iter 100 value 83.850568
final value 83.850568
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.237042
final value 94.054677
converged
Fitting Repeat 3
# weights: 103
initial value 97.752306
final value 94.054712
converged
Fitting Repeat 4
# weights: 103
initial value 107.214654
final value 94.054589
converged
Fitting Repeat 5
# weights: 103
initial value 101.506107
iter 10 value 93.276872
iter 20 value 92.840381
final value 92.839520
converged
Fitting Repeat 1
# weights: 305
initial value 95.471558
iter 10 value 94.057384
iter 20 value 94.049786
iter 30 value 93.862635
iter 40 value 93.789446
iter 50 value 93.788888
iter 60 value 93.786836
iter 70 value 86.936536
iter 80 value 86.935381
iter 90 value 84.951101
iter 100 value 84.949486
final value 84.949486
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 117.056955
iter 10 value 93.920792
iter 20 value 93.519765
iter 30 value 82.449038
iter 40 value 82.227002
final value 82.180530
converged
Fitting Repeat 3
# weights: 305
initial value 101.833116
iter 10 value 93.871015
iter 20 value 93.700271
iter 30 value 83.360915
iter 40 value 81.738040
final value 81.718464
converged
Fitting Repeat 4
# weights: 305
initial value 124.311863
iter 10 value 93.920403
iter 20 value 93.915874
iter 30 value 86.888014
iter 40 value 84.621517
iter 50 value 82.908571
iter 60 value 82.869639
final value 82.869605
converged
Fitting Repeat 5
# weights: 305
initial value 94.859102
iter 10 value 94.057546
iter 20 value 93.445014
iter 30 value 90.163490
iter 40 value 90.158416
iter 50 value 89.833490
iter 60 value 89.611243
final value 89.609279
converged
Fitting Repeat 1
# weights: 507
initial value 96.210259
iter 10 value 94.061200
iter 20 value 94.054383
iter 30 value 93.387290
iter 40 value 84.960188
iter 50 value 84.958778
iter 60 value 84.608250
final value 84.607002
converged
Fitting Repeat 2
# weights: 507
initial value 134.037005
iter 10 value 93.924996
iter 20 value 93.602425
iter 30 value 84.783069
iter 40 value 84.778907
iter 50 value 84.773218
final value 84.773034
converged
Fitting Repeat 3
# weights: 507
initial value 102.953932
iter 10 value 94.059451
iter 20 value 93.875884
iter 30 value 88.406718
iter 40 value 82.742465
iter 50 value 81.516550
iter 60 value 81.243493
final value 81.114303
converged
Fitting Repeat 4
# weights: 507
initial value 99.100563
iter 10 value 86.582810
iter 20 value 86.146069
iter 30 value 85.025468
iter 40 value 81.864375
iter 50 value 81.821878
iter 60 value 81.788788
iter 70 value 81.556051
iter 80 value 81.064383
iter 90 value 81.040224
iter 100 value 81.039500
final value 81.039500
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.959255
iter 10 value 87.016653
iter 20 value 86.294129
iter 30 value 86.261658
iter 40 value 86.260376
iter 50 value 85.415116
iter 60 value 85.414516
iter 70 value 85.412271
iter 80 value 85.353616
iter 90 value 85.260349
iter 100 value 85.259636
final value 85.259636
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.978044
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.317059
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 118.467027
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.062822
final value 93.813953
converged
Fitting Repeat 5
# weights: 103
initial value 110.145674
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 108.189081
final value 94.275362
converged
Fitting Repeat 2
# weights: 305
initial value 113.575458
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.605723
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 105.310253
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 99.695638
final value 94.275362
converged
Fitting Repeat 1
# weights: 507
initial value 102.456441
final value 94.275362
converged
Fitting Repeat 2
# weights: 507
initial value 97.632081
iter 10 value 92.580042
iter 20 value 90.808756
iter 30 value 90.786129
iter 40 value 90.785716
final value 90.785715
converged
Fitting Repeat 3
# weights: 507
initial value 102.906998
iter 10 value 94.275418
final value 94.275363
converged
Fitting Repeat 4
# weights: 507
initial value 98.671258
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 112.015717
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.279809
iter 10 value 94.221446
iter 20 value 91.454002
iter 30 value 91.323390
iter 40 value 91.255765
iter 50 value 91.250202
iter 50 value 91.250201
iter 50 value 91.250201
final value 91.250201
converged
Fitting Repeat 2
# weights: 103
initial value 104.797032
iter 10 value 94.859763
iter 20 value 94.499623
iter 30 value 94.429199
iter 40 value 93.861101
iter 50 value 93.815825
iter 60 value 93.811310
iter 60 value 93.811310
iter 60 value 93.811310
final value 93.811310
converged
Fitting Repeat 3
# weights: 103
initial value 101.694164
iter 10 value 94.492946
iter 20 value 94.005100
iter 30 value 93.875496
iter 40 value 93.814503
iter 50 value 93.811313
final value 93.811309
converged
Fitting Repeat 4
# weights: 103
initial value 103.528125
iter 10 value 94.488636
iter 20 value 93.886581
iter 30 value 93.834874
iter 40 value 93.495745
iter 50 value 91.075856
iter 60 value 87.219769
iter 70 value 85.387195
iter 80 value 83.271958
iter 90 value 82.000548
iter 100 value 81.623087
final value 81.623087
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 101.014618
iter 10 value 94.488554
iter 20 value 94.328770
iter 30 value 93.959606
iter 40 value 93.883622
final value 93.883238
converged
Fitting Repeat 1
# weights: 305
initial value 108.338875
iter 10 value 94.516107
iter 20 value 94.241068
iter 30 value 92.527958
iter 40 value 86.531920
iter 50 value 84.864067
iter 60 value 84.586268
iter 70 value 82.929019
iter 80 value 81.318635
iter 90 value 81.137881
iter 100 value 80.628963
final value 80.628963
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.829738
iter 10 value 94.269239
iter 20 value 90.346047
iter 30 value 88.981937
iter 40 value 88.062690
iter 50 value 87.255195
iter 60 value 87.021746
iter 70 value 86.955539
iter 80 value 85.056436
iter 90 value 82.912546
iter 100 value 81.889540
final value 81.889540
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 115.524052
iter 10 value 97.424311
iter 20 value 94.493064
iter 30 value 91.704932
iter 40 value 87.832646
iter 50 value 87.289037
iter 60 value 87.250047
iter 70 value 87.022483
iter 80 value 84.693477
iter 90 value 83.518149
iter 100 value 83.470481
final value 83.470481
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.916760
iter 10 value 94.443280
iter 20 value 91.911312
iter 30 value 87.920373
iter 40 value 84.423696
iter 50 value 80.920818
iter 60 value 80.416208
iter 70 value 80.317952
iter 80 value 80.126511
iter 90 value 79.863480
iter 100 value 79.469985
final value 79.469985
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.391631
iter 10 value 94.502366
iter 20 value 94.418058
iter 30 value 92.424254
iter 40 value 86.014115
iter 50 value 83.937052
iter 60 value 83.741248
iter 70 value 83.117853
iter 80 value 81.817883
iter 90 value 81.200599
iter 100 value 80.771256
final value 80.771256
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.703086
iter 10 value 95.008593
iter 20 value 88.642854
iter 30 value 85.639976
iter 40 value 83.549306
iter 50 value 82.289418
iter 60 value 81.494022
iter 70 value 80.352650
iter 80 value 79.913868
iter 90 value 79.655047
iter 100 value 79.606783
final value 79.606783
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.181160
iter 10 value 95.831341
iter 20 value 87.819660
iter 30 value 85.996466
iter 40 value 83.535725
iter 50 value 82.829477
iter 60 value 82.256418
iter 70 value 82.007989
iter 80 value 81.425901
iter 90 value 81.369162
iter 100 value 81.230736
final value 81.230736
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.239098
iter 10 value 93.184783
iter 20 value 92.075341
iter 30 value 88.059497
iter 40 value 84.922156
iter 50 value 83.340368
iter 60 value 82.002412
iter 70 value 80.567677
iter 80 value 80.265808
iter 90 value 80.181900
iter 100 value 80.158072
final value 80.158072
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.888684
iter 10 value 94.473675
iter 20 value 94.041565
iter 30 value 92.413290
iter 40 value 88.245256
iter 50 value 87.463815
iter 60 value 87.278475
iter 70 value 87.098852
iter 80 value 86.961162
iter 90 value 82.709850
iter 100 value 80.390300
final value 80.390300
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.693669
iter 10 value 94.425527
iter 20 value 93.187332
iter 30 value 87.486996
iter 40 value 85.504889
iter 50 value 84.890324
iter 60 value 84.436826
iter 70 value 83.116746
iter 80 value 81.931005
iter 90 value 81.164229
iter 100 value 80.389117
final value 80.389117
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.488213
final value 94.485834
converged
Fitting Repeat 2
# weights: 103
initial value 109.027704
final value 94.054126
converged
Fitting Repeat 3
# weights: 103
initial value 95.372277
final value 94.485921
converged
Fitting Repeat 4
# weights: 103
initial value 95.960972
final value 94.485625
converged
Fitting Repeat 5
# weights: 103
initial value 95.704963
final value 94.277381
converged
Fitting Repeat 1
# weights: 305
initial value 104.123302
iter 10 value 94.489085
iter 20 value 93.145819
iter 30 value 84.675915
iter 40 value 84.656687
iter 50 value 84.399506
iter 60 value 84.315580
iter 70 value 84.307510
iter 80 value 84.306850
iter 80 value 84.306850
final value 84.306850
converged
Fitting Repeat 2
# weights: 305
initial value 96.175913
iter 10 value 94.488817
iter 20 value 93.539400
iter 30 value 86.456680
iter 40 value 84.854734
iter 50 value 84.399908
iter 60 value 84.380434
iter 70 value 83.840571
final value 83.820407
converged
Fitting Repeat 3
# weights: 305
initial value 101.686510
iter 10 value 94.489396
iter 20 value 94.460087
iter 30 value 93.788230
final value 93.788227
converged
Fitting Repeat 4
# weights: 305
initial value 94.607537
iter 10 value 94.486750
iter 20 value 93.224354
iter 30 value 91.511618
final value 91.507596
converged
Fitting Repeat 5
# weights: 305
initial value 106.361580
iter 10 value 94.488523
iter 20 value 94.484242
iter 30 value 94.456462
iter 40 value 85.650824
iter 50 value 84.189690
iter 60 value 82.178912
iter 70 value 81.883742
iter 80 value 81.847484
iter 90 value 81.842894
iter 100 value 81.842711
final value 81.842711
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.982608
iter 10 value 94.490999
iter 20 value 94.482786
iter 30 value 94.161956
iter 40 value 91.282997
iter 50 value 84.387388
iter 60 value 81.458116
iter 70 value 80.528031
iter 80 value 79.415862
iter 90 value 79.192307
iter 100 value 79.163999
final value 79.163999
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.933998
iter 10 value 94.492036
iter 20 value 94.484632
iter 30 value 90.878628
iter 40 value 85.730192
iter 50 value 84.762473
iter 60 value 84.737572
iter 70 value 84.726097
iter 80 value 84.229893
iter 90 value 83.852644
iter 100 value 83.852335
final value 83.852335
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 127.614413
iter 10 value 94.283556
iter 20 value 94.244280
iter 30 value 87.429287
iter 40 value 84.444974
iter 50 value 82.853695
iter 60 value 80.797107
iter 70 value 80.069788
iter 80 value 78.385710
iter 90 value 78.059080
iter 100 value 77.962547
final value 77.962547
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.385677
iter 10 value 94.262267
iter 20 value 94.236536
iter 30 value 94.231591
iter 40 value 94.223653
iter 50 value 88.948536
iter 60 value 86.182081
iter 70 value 86.122693
iter 80 value 86.122050
iter 90 value 86.093188
final value 86.092594
converged
Fitting Repeat 5
# weights: 507
initial value 120.593661
iter 10 value 94.283510
iter 20 value 94.043990
iter 30 value 91.272773
iter 40 value 91.181799
final value 91.123356
converged
Fitting Repeat 1
# weights: 103
initial value 97.746491
iter 10 value 91.495408
iter 20 value 89.386056
iter 30 value 89.254471
iter 40 value 89.221729
final value 89.221721
converged
Fitting Repeat 2
# weights: 103
initial value 94.808260
final value 94.466823
converged
Fitting Repeat 3
# weights: 103
initial value 95.635755
final value 94.466823
converged
Fitting Repeat 4
# weights: 103
initial value 101.857731
iter 10 value 88.942279
iter 20 value 87.033973
final value 87.032771
converged
Fitting Repeat 5
# weights: 103
initial value 96.737880
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.444828
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 107.648079
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 98.487830
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.563969
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 105.774781
iter 10 value 94.467392
iter 10 value 94.467391
iter 10 value 94.467391
final value 94.467391
converged
Fitting Repeat 1
# weights: 507
initial value 95.086144
final value 94.467391
converged
Fitting Repeat 2
# weights: 507
initial value 115.216657
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 102.402834
iter 10 value 94.467391
iter 10 value 94.467391
iter 10 value 94.467391
final value 94.467391
converged
Fitting Repeat 4
# weights: 507
initial value 114.479173
final value 94.467391
converged
Fitting Repeat 5
# weights: 507
initial value 105.560365
iter 10 value 94.466667
iter 10 value 94.466667
iter 10 value 94.466667
final value 94.466667
converged
Fitting Repeat 1
# weights: 103
initial value 115.710524
iter 10 value 94.650507
iter 20 value 94.488537
iter 30 value 94.478401
iter 40 value 94.471531
iter 50 value 93.151065
iter 60 value 91.184187
iter 70 value 90.823835
iter 80 value 88.730303
iter 90 value 86.538259
iter 100 value 85.619607
final value 85.619607
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.128777
iter 10 value 94.329810
iter 20 value 86.954520
iter 30 value 85.901933
iter 40 value 85.256487
iter 50 value 84.520290
iter 60 value 84.030712
iter 70 value 83.527878
iter 80 value 83.182791
iter 90 value 83.027903
final value 83.027839
converged
Fitting Repeat 3
# weights: 103
initial value 96.422336
iter 10 value 94.330547
iter 20 value 86.658830
iter 30 value 86.357500
iter 40 value 85.759689
iter 50 value 84.795224
iter 60 value 84.482861
iter 70 value 84.481427
iter 70 value 84.481426
iter 70 value 84.481426
final value 84.481426
converged
Fitting Repeat 4
# weights: 103
initial value 102.285912
iter 10 value 93.538083
iter 20 value 86.279713
iter 30 value 85.777021
iter 40 value 85.134781
iter 50 value 84.930833
iter 60 value 84.907936
final value 84.906603
converged
Fitting Repeat 5
# weights: 103
initial value 102.872889
iter 10 value 94.488654
iter 20 value 94.487685
iter 30 value 94.482328
iter 40 value 87.293451
iter 50 value 86.801368
iter 60 value 86.048512
iter 70 value 85.548706
iter 80 value 85.293137
final value 85.291107
converged
Fitting Repeat 1
# weights: 305
initial value 107.449636
iter 10 value 94.549708
iter 20 value 87.886145
iter 30 value 86.077774
iter 40 value 85.836687
iter 50 value 85.375204
iter 60 value 82.926538
iter 70 value 82.614255
iter 80 value 82.326286
iter 90 value 82.033767
iter 100 value 81.907206
final value 81.907206
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.371592
iter 10 value 94.668160
iter 20 value 85.738096
iter 30 value 83.407867
iter 40 value 83.030219
iter 50 value 82.957097
iter 60 value 82.679223
iter 70 value 82.475512
iter 80 value 82.221721
iter 90 value 80.999935
iter 100 value 80.821890
final value 80.821890
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.326764
iter 10 value 94.504379
iter 20 value 91.409947
iter 30 value 90.098560
iter 40 value 88.515828
iter 50 value 87.632997
iter 60 value 87.202778
iter 70 value 84.645987
iter 80 value 83.694721
iter 90 value 83.480757
iter 100 value 82.354480
final value 82.354480
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.503974
iter 10 value 94.513671
iter 20 value 87.157520
iter 30 value 85.412750
iter 40 value 84.868795
iter 50 value 83.383072
iter 60 value 82.746756
iter 70 value 81.813608
iter 80 value 81.336905
iter 90 value 81.007371
iter 100 value 80.823553
final value 80.823553
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.395162
iter 10 value 94.525980
iter 20 value 93.210051
iter 30 value 90.882172
iter 40 value 87.779747
iter 50 value 85.028716
iter 60 value 83.162019
iter 70 value 81.446043
iter 80 value 80.659334
iter 90 value 80.482259
iter 100 value 80.355027
final value 80.355027
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.094914
iter 10 value 94.328061
iter 20 value 91.445014
iter 30 value 86.543209
iter 40 value 83.969472
iter 50 value 81.440596
iter 60 value 80.887635
iter 70 value 80.751653
iter 80 value 80.697928
iter 90 value 80.620511
iter 100 value 80.572333
final value 80.572333
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 133.528232
iter 10 value 94.910528
iter 20 value 93.874672
iter 30 value 93.468486
iter 40 value 93.282988
iter 50 value 93.246077
iter 60 value 89.895488
iter 70 value 87.291910
iter 80 value 84.764353
iter 90 value 83.904575
iter 100 value 83.724516
final value 83.724516
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.254014
iter 10 value 94.469535
iter 20 value 93.818654
iter 30 value 85.457308
iter 40 value 83.967753
iter 50 value 83.177051
iter 60 value 82.797544
iter 70 value 82.523845
iter 80 value 82.083777
iter 90 value 81.685767
iter 100 value 81.451207
final value 81.451207
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.064440
iter 10 value 94.847101
iter 20 value 94.148489
iter 30 value 89.938876
iter 40 value 89.330013
iter 50 value 89.134424
iter 60 value 88.860393
iter 70 value 88.500194
iter 80 value 86.428762
iter 90 value 85.173464
iter 100 value 82.995692
final value 82.995692
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.398904
iter 10 value 93.590862
iter 20 value 84.295335
iter 30 value 82.286679
iter 40 value 81.957502
iter 50 value 81.390453
iter 60 value 81.053215
iter 70 value 80.845422
iter 80 value 80.497041
iter 90 value 80.250563
iter 100 value 80.063378
final value 80.063378
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.832173
final value 94.485785
converged
Fitting Repeat 2
# weights: 103
initial value 98.043242
final value 94.485885
converged
Fitting Repeat 3
# weights: 103
initial value 102.310837
iter 10 value 94.485846
iter 20 value 94.481979
iter 30 value 89.135060
iter 40 value 87.168118
iter 50 value 86.759449
iter 60 value 85.511810
iter 70 value 85.308841
final value 85.308591
converged
Fitting Repeat 4
# weights: 103
initial value 104.362037
final value 94.486123
converged
Fitting Repeat 5
# weights: 103
initial value 95.707491
final value 94.484136
converged
Fitting Repeat 1
# weights: 305
initial value 107.549548
iter 10 value 94.471962
iter 20 value 94.467858
iter 30 value 94.466492
iter 40 value 87.746818
iter 50 value 85.177629
iter 60 value 84.797100
iter 70 value 83.860849
iter 80 value 83.549870
iter 90 value 83.482254
iter 100 value 83.481470
final value 83.481470
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.564288
iter 10 value 94.471928
iter 20 value 94.468224
final value 94.467422
converged
Fitting Repeat 3
# weights: 305
initial value 105.121930
iter 10 value 94.472651
iter 20 value 94.467753
final value 94.467573
converged
Fitting Repeat 4
# weights: 305
initial value 95.166236
iter 10 value 94.488635
iter 20 value 94.478698
iter 30 value 89.221433
iter 40 value 87.040451
iter 50 value 87.037796
iter 60 value 87.028426
iter 70 value 86.961421
iter 80 value 84.193949
iter 90 value 84.149708
iter 100 value 83.050209
final value 83.050209
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 96.300015
iter 10 value 93.608827
iter 20 value 93.417637
iter 30 value 93.376506
iter 40 value 93.293415
iter 50 value 93.287865
iter 60 value 93.282948
iter 70 value 93.280989
iter 80 value 93.278804
iter 90 value 92.001281
iter 100 value 89.358641
final value 89.358641
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.883907
iter 10 value 94.491913
iter 20 value 94.484415
iter 30 value 87.228634
iter 40 value 86.028580
iter 50 value 83.360349
iter 60 value 80.453914
iter 70 value 80.399421
final value 80.399084
converged
Fitting Repeat 2
# weights: 507
initial value 100.201460
iter 10 value 94.492412
iter 20 value 94.380680
iter 30 value 90.995333
iter 40 value 89.993189
iter 50 value 89.558957
iter 60 value 89.520738
iter 70 value 89.520577
final value 89.520167
converged
Fitting Repeat 3
# weights: 507
initial value 107.552369
iter 10 value 94.481452
iter 20 value 94.475178
iter 30 value 94.470122
final value 94.467795
converged
Fitting Repeat 4
# weights: 507
initial value 96.229850
iter 10 value 93.700089
iter 20 value 93.691329
iter 30 value 93.687192
iter 40 value 93.685650
iter 50 value 92.702440
iter 60 value 91.771406
iter 70 value 91.473379
iter 80 value 91.430080
final value 91.430057
converged
Fitting Repeat 5
# weights: 507
initial value 103.610036
iter 10 value 92.789526
iter 20 value 87.269257
iter 30 value 85.992706
iter 40 value 85.946766
iter 50 value 85.904580
iter 60 value 85.731055
iter 70 value 85.709048
iter 80 value 83.082012
iter 90 value 82.956288
iter 100 value 82.630837
final value 82.630837
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.692386
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.936558
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.178069
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.478904
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.413658
final value 93.300000
converged
Fitting Repeat 1
# weights: 305
initial value 94.718467
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 107.101026
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 96.425268
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 113.073950
iter 10 value 93.022862
final value 93.022222
converged
Fitting Repeat 5
# weights: 305
initial value 101.398907
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 108.380901
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 100.158597
final value 93.300000
converged
Fitting Repeat 3
# weights: 507
initial value 109.978239
iter 10 value 93.772979
final value 93.772973
converged
Fitting Repeat 4
# weights: 507
initial value 114.677895
iter 10 value 94.476057
final value 94.472273
converged
Fitting Repeat 5
# weights: 507
initial value 96.560784
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 109.885363
iter 10 value 93.726573
iter 20 value 86.963799
iter 30 value 83.805896
iter 40 value 82.949208
iter 50 value 81.581752
iter 60 value 80.618590
iter 70 value 80.110707
iter 80 value 80.051255
final value 80.050235
converged
Fitting Repeat 2
# weights: 103
initial value 96.833249
iter 10 value 94.280623
iter 20 value 88.304220
iter 30 value 84.349401
iter 40 value 83.560646
iter 50 value 81.728103
iter 60 value 81.435384
iter 70 value 81.433003
iter 80 value 81.432584
final value 81.432415
converged
Fitting Repeat 3
# weights: 103
initial value 114.314852
iter 10 value 93.699081
iter 20 value 86.923206
iter 30 value 86.621654
iter 40 value 84.911485
iter 50 value 84.465970
iter 60 value 84.343538
iter 70 value 84.330847
final value 84.330844
converged
Fitting Repeat 4
# weights: 103
initial value 99.443665
iter 10 value 94.462867
iter 20 value 89.297376
iter 30 value 85.342071
iter 40 value 84.417591
iter 50 value 83.982571
iter 60 value 83.847344
iter 70 value 82.191890
iter 80 value 81.103996
iter 90 value 80.185168
iter 100 value 80.081881
final value 80.081881
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 105.312052
iter 10 value 94.507295
iter 20 value 94.472069
iter 30 value 90.062271
iter 40 value 87.610091
iter 50 value 87.322949
iter 60 value 85.192531
iter 70 value 84.471592
iter 80 value 84.352313
iter 90 value 84.333352
final value 84.330844
converged
Fitting Repeat 1
# weights: 305
initial value 108.783184
iter 10 value 97.958325
iter 20 value 94.913816
iter 30 value 93.592087
iter 40 value 91.975268
iter 50 value 91.005247
iter 60 value 89.087830
iter 70 value 88.940213
iter 80 value 87.476783
iter 90 value 81.355647
iter 100 value 79.666336
final value 79.666336
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.967076
iter 10 value 93.808010
iter 20 value 87.804718
iter 30 value 85.411630
iter 40 value 84.476501
iter 50 value 82.810182
iter 60 value 81.005204
iter 70 value 80.423442
iter 80 value 79.833612
iter 90 value 79.440970
iter 100 value 79.354807
final value 79.354807
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.053539
iter 10 value 94.710870
iter 20 value 94.538898
iter 30 value 94.495194
iter 40 value 92.831873
iter 50 value 85.860960
iter 60 value 82.340187
iter 70 value 80.587980
iter 80 value 80.327905
iter 90 value 79.886028
iter 100 value 79.585118
final value 79.585118
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.434203
iter 10 value 91.833201
iter 20 value 84.543915
iter 30 value 81.996075
iter 40 value 80.311494
iter 50 value 79.431206
iter 60 value 79.171622
iter 70 value 79.121295
iter 80 value 79.069682
iter 90 value 78.981444
iter 100 value 78.898524
final value 78.898524
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 121.185571
iter 10 value 94.387695
iter 20 value 93.525782
iter 30 value 86.284215
iter 40 value 84.227968
iter 50 value 83.135312
iter 60 value 80.701768
iter 70 value 80.452836
iter 80 value 79.371730
iter 90 value 79.052916
iter 100 value 78.976071
final value 78.976071
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.578521
iter 10 value 94.524908
iter 20 value 88.063999
iter 30 value 86.222453
iter 40 value 84.549074
iter 50 value 83.598818
iter 60 value 83.566211
iter 70 value 83.413731
iter 80 value 82.730575
iter 90 value 80.160014
iter 100 value 79.475778
final value 79.475778
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 142.296492
iter 10 value 98.383085
iter 20 value 93.367918
iter 30 value 92.290601
iter 40 value 90.695072
iter 50 value 85.098991
iter 60 value 82.878882
iter 70 value 80.595075
iter 80 value 79.616782
iter 90 value 79.280483
iter 100 value 79.121491
final value 79.121491
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.931690
iter 10 value 91.469304
iter 20 value 89.672550
iter 30 value 84.716098
iter 40 value 83.370866
iter 50 value 82.206793
iter 60 value 81.879810
iter 70 value 81.652610
iter 80 value 80.641749
iter 90 value 80.246940
iter 100 value 80.068472
final value 80.068472
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.211301
iter 10 value 94.311065
iter 20 value 87.375821
iter 30 value 83.659098
iter 40 value 82.128956
iter 50 value 81.417853
iter 60 value 79.791701
iter 70 value 79.357832
iter 80 value 79.288829
iter 90 value 79.064708
iter 100 value 79.047810
final value 79.047810
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.634795
iter 10 value 94.892324
iter 20 value 87.777024
iter 30 value 86.912446
iter 40 value 85.916950
iter 50 value 82.031029
iter 60 value 81.042686
iter 70 value 80.619461
iter 80 value 79.777634
iter 90 value 79.162344
iter 100 value 79.013362
final value 79.013362
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.107326
final value 94.485840
converged
Fitting Repeat 2
# weights: 103
initial value 97.699463
iter 10 value 94.486058
iter 20 value 94.484232
iter 20 value 94.484232
iter 20 value 94.484232
final value 94.484232
converged
Fitting Repeat 3
# weights: 103
initial value 94.818494
iter 10 value 89.824108
iter 20 value 86.959406
iter 30 value 86.626905
iter 40 value 86.351070
final value 86.350571
converged
Fitting Repeat 4
# weights: 103
initial value 99.276923
final value 94.485909
converged
Fitting Repeat 5
# weights: 103
initial value 104.817412
final value 94.485818
converged
Fitting Repeat 1
# weights: 305
initial value 98.690024
iter 10 value 94.489107
iter 20 value 93.850156
iter 30 value 90.618271
iter 40 value 87.567419
iter 50 value 84.323500
iter 60 value 84.157514
iter 70 value 84.155686
iter 80 value 84.154580
iter 90 value 84.130794
iter 100 value 82.939856
final value 82.939856
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 97.122991
iter 10 value 94.488599
iter 20 value 94.402481
iter 30 value 93.256290
iter 40 value 90.231683
iter 50 value 81.315056
iter 60 value 80.041443
iter 70 value 79.960051
iter 80 value 79.959835
final value 79.959786
converged
Fitting Repeat 3
# weights: 305
initial value 102.029074
iter 10 value 94.489260
iter 20 value 94.474941
iter 30 value 84.158245
iter 40 value 82.497645
iter 50 value 80.544695
iter 60 value 80.525523
final value 80.525459
converged
Fitting Repeat 4
# weights: 305
initial value 95.685753
iter 10 value 88.830114
iter 20 value 88.798346
iter 30 value 88.794567
iter 40 value 87.489401
iter 50 value 87.155840
final value 87.155732
converged
Fitting Repeat 5
# weights: 305
initial value 112.958804
iter 10 value 94.451648
iter 20 value 94.192387
iter 30 value 91.620640
iter 40 value 91.616542
iter 50 value 91.615323
iter 60 value 91.392699
iter 70 value 90.148276
final value 90.148271
converged
Fitting Repeat 1
# weights: 507
initial value 130.771090
iter 10 value 94.457803
iter 20 value 94.186309
iter 30 value 93.757164
iter 40 value 89.938264
iter 50 value 87.429905
iter 60 value 87.272557
final value 87.272017
converged
Fitting Repeat 2
# weights: 507
initial value 99.397510
iter 10 value 94.492439
iter 20 value 93.286694
iter 30 value 87.430137
iter 40 value 86.019724
iter 50 value 81.214383
iter 60 value 80.913396
iter 70 value 80.876286
iter 80 value 80.875323
iter 90 value 80.708071
iter 100 value 79.927891
final value 79.927891
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.592388
iter 10 value 91.992075
iter 20 value 91.989723
iter 30 value 91.350296
iter 40 value 89.671984
iter 50 value 89.662434
iter 60 value 89.661669
iter 70 value 89.660973
final value 89.660708
converged
Fitting Repeat 4
# weights: 507
initial value 108.885200
iter 10 value 93.779459
iter 20 value 93.730584
iter 30 value 93.326091
iter 40 value 92.968347
iter 50 value 92.964679
iter 60 value 92.961125
iter 70 value 91.597679
iter 80 value 81.900767
iter 90 value 79.401234
iter 100 value 79.262569
final value 79.262569
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.888465
iter 10 value 90.176613
iter 20 value 85.189238
iter 30 value 84.839762
iter 40 value 84.536729
iter 50 value 84.467750
iter 60 value 84.029120
iter 70 value 83.633327
iter 80 value 83.631678
iter 90 value 83.629925
iter 100 value 82.475671
final value 82.475671
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.641966
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 100.068698
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.504278
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.186605
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.257948
final value 93.653870
converged
Fitting Repeat 1
# weights: 305
initial value 102.439634
final value 93.653870
converged
Fitting Repeat 2
# weights: 305
initial value 116.114786
iter 10 value 93.810011
iter 10 value 93.810011
iter 10 value 93.810011
final value 93.810011
converged
Fitting Repeat 3
# weights: 305
initial value 100.965162
iter 10 value 86.765730
final value 82.735065
converged
Fitting Repeat 4
# weights: 305
initial value 98.415402
final value 94.032967
converged
Fitting Repeat 5
# weights: 305
initial value 101.786840
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 108.125475
final value 94.032967
converged
Fitting Repeat 2
# weights: 507
initial value 97.838936
iter 10 value 94.031442
iter 20 value 91.624788
iter 30 value 86.197654
iter 40 value 85.678207
iter 50 value 85.676667
final value 85.675815
converged
Fitting Repeat 3
# weights: 507
initial value 104.867260
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 102.913777
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 96.736857
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 100.988689
iter 10 value 94.065407
iter 20 value 86.436326
iter 30 value 83.974372
iter 40 value 83.645101
iter 50 value 83.555413
iter 60 value 82.601247
iter 70 value 82.533608
iter 80 value 81.840871
iter 90 value 81.569437
iter 100 value 81.382232
final value 81.382232
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.351572
iter 10 value 94.118185
iter 20 value 94.057129
iter 30 value 89.317038
iter 40 value 87.055752
iter 50 value 86.329999
iter 60 value 86.128738
iter 70 value 84.326743
iter 80 value 83.244070
iter 90 value 83.159335
iter 100 value 82.691312
final value 82.691312
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 114.144603
iter 10 value 93.899862
iter 20 value 84.154735
iter 30 value 83.853707
iter 40 value 82.556509
iter 50 value 82.400640
iter 60 value 82.327341
iter 70 value 81.751624
iter 80 value 81.391068
final value 81.384197
converged
Fitting Repeat 4
# weights: 103
initial value 98.578169
iter 10 value 93.893007
iter 20 value 90.804469
iter 30 value 87.591219
iter 40 value 83.917757
iter 50 value 83.574582
iter 60 value 82.816059
iter 70 value 82.152930
iter 80 value 82.116535
iter 90 value 81.969662
iter 100 value 81.519671
final value 81.519671
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 104.249630
iter 10 value 94.865484
iter 20 value 94.021138
iter 30 value 89.913567
iter 40 value 83.129765
iter 50 value 83.038460
iter 60 value 82.858109
iter 70 value 82.665403
iter 80 value 82.594293
final value 82.594250
converged
Fitting Repeat 1
# weights: 305
initial value 101.425627
iter 10 value 93.846469
iter 20 value 84.125125
iter 30 value 83.550294
iter 40 value 83.259141
iter 50 value 82.428104
iter 60 value 82.369284
iter 70 value 81.987527
iter 80 value 81.496635
iter 90 value 81.318758
iter 100 value 81.285554
final value 81.285554
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.630277
iter 10 value 94.075175
iter 20 value 92.857800
iter 30 value 85.694804
iter 40 value 85.300640
iter 50 value 82.811741
iter 60 value 81.980384
iter 70 value 81.713821
iter 80 value 81.567523
iter 90 value 81.496527
iter 100 value 81.319506
final value 81.319506
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.282154
iter 10 value 94.068637
iter 20 value 93.933043
iter 30 value 85.589357
iter 40 value 83.592052
iter 50 value 82.886960
iter 60 value 81.919081
iter 70 value 81.491786
iter 80 value 81.063253
iter 90 value 80.646798
iter 100 value 80.328641
final value 80.328641
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.224337
iter 10 value 94.076824
iter 20 value 91.769801
iter 30 value 86.961171
iter 40 value 85.985534
iter 50 value 85.911486
iter 60 value 85.494370
iter 70 value 82.374580
iter 80 value 81.760954
iter 90 value 81.039076
iter 100 value 80.665523
final value 80.665523
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.642096
iter 10 value 94.157504
iter 20 value 93.709238
iter 30 value 93.250896
iter 40 value 93.043471
iter 50 value 83.015290
iter 60 value 82.534462
iter 70 value 82.310731
iter 80 value 82.283924
iter 90 value 82.150906
iter 100 value 81.413514
final value 81.413514
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.820567
iter 10 value 93.926272
iter 20 value 91.407516
iter 30 value 84.111500
iter 40 value 83.868307
iter 50 value 83.552299
iter 60 value 82.072630
iter 70 value 81.002037
iter 80 value 80.769137
iter 90 value 80.247765
iter 100 value 79.973411
final value 79.973411
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.661159
iter 10 value 93.291104
iter 20 value 86.474774
iter 30 value 83.274080
iter 40 value 82.778401
iter 50 value 82.529148
iter 60 value 82.310275
iter 70 value 82.236966
iter 80 value 82.018854
iter 90 value 80.916114
iter 100 value 80.277333
final value 80.277333
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.669986
iter 10 value 94.100772
iter 20 value 93.561847
iter 30 value 93.381524
iter 40 value 85.799971
iter 50 value 82.704030
iter 60 value 82.474572
iter 70 value 81.710704
iter 80 value 81.189532
iter 90 value 80.935204
iter 100 value 80.715365
final value 80.715365
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.602911
iter 10 value 92.258174
iter 20 value 86.637736
iter 30 value 84.951450
iter 40 value 83.066079
iter 50 value 81.755091
iter 60 value 80.726102
iter 70 value 80.358514
iter 80 value 80.243600
iter 90 value 80.064426
iter 100 value 79.790251
final value 79.790251
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.311373
iter 10 value 94.068886
iter 20 value 93.571746
iter 30 value 87.949608
iter 40 value 84.452647
iter 50 value 83.386636
iter 60 value 83.170814
iter 70 value 82.922323
iter 80 value 80.750674
iter 90 value 80.225105
iter 100 value 80.143896
final value 80.143896
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 93.985289
iter 10 value 93.675088
iter 20 value 93.674339
iter 30 value 87.533720
iter 40 value 85.720742
iter 50 value 85.664103
iter 60 value 85.662005
iter 70 value 84.572485
iter 80 value 84.572257
iter 90 value 84.494155
iter 100 value 84.491646
final value 84.491646
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.635966
final value 94.054533
converged
Fitting Repeat 3
# weights: 103
initial value 109.668832
iter 10 value 94.054475
iter 20 value 94.053000
final value 94.052916
converged
Fitting Repeat 4
# weights: 103
initial value 94.763036
final value 94.054686
converged
Fitting Repeat 5
# weights: 103
initial value 97.647115
final value 94.054418
converged
Fitting Repeat 1
# weights: 305
initial value 95.758787
iter 10 value 94.057240
iter 20 value 93.990173
iter 30 value 88.417991
iter 40 value 82.696103
iter 50 value 82.544465
final value 82.543453
converged
Fitting Repeat 2
# weights: 305
initial value 100.629847
iter 10 value 94.037868
iter 20 value 93.281731
iter 30 value 93.258239
iter 30 value 93.258238
iter 30 value 93.258238
final value 93.258238
converged
Fitting Repeat 3
# weights: 305
initial value 99.221479
iter 10 value 94.058329
iter 20 value 93.992237
iter 30 value 82.553811
iter 40 value 82.499043
iter 50 value 82.494890
iter 60 value 82.296758
iter 70 value 82.285429
iter 80 value 82.239404
iter 90 value 82.033473
iter 100 value 81.091513
final value 81.091513
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.692216
iter 10 value 93.284130
iter 20 value 90.454685
iter 30 value 85.317636
iter 40 value 85.315427
iter 50 value 85.314820
final value 85.314802
converged
Fitting Repeat 5
# weights: 305
initial value 95.634740
iter 10 value 94.057541
iter 20 value 94.053026
iter 30 value 92.889741
iter 30 value 92.889741
iter 30 value 92.889741
final value 92.889741
converged
Fitting Repeat 1
# weights: 507
initial value 97.613670
iter 10 value 94.057202
iter 20 value 88.857365
iter 30 value 82.542908
iter 40 value 82.531977
iter 50 value 82.523804
iter 60 value 82.283917
iter 70 value 82.251053
final value 82.251009
converged
Fitting Repeat 2
# weights: 507
initial value 132.192575
iter 10 value 94.040948
iter 20 value 93.800704
iter 30 value 93.287269
iter 40 value 90.897941
iter 50 value 90.037057
iter 60 value 82.554917
iter 70 value 80.816081
iter 80 value 80.675244
iter 90 value 80.601353
iter 100 value 80.406921
final value 80.406921
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.128529
iter 10 value 93.297142
iter 20 value 93.290847
iter 30 value 87.818561
iter 40 value 81.309998
iter 50 value 81.093747
iter 60 value 80.880720
final value 80.782815
converged
Fitting Repeat 4
# weights: 507
initial value 106.372112
iter 10 value 94.040911
iter 20 value 85.669842
iter 30 value 85.637253
iter 40 value 85.629988
iter 50 value 85.596011
iter 60 value 82.612011
iter 70 value 80.846073
iter 80 value 80.840578
iter 90 value 80.527904
iter 100 value 80.474840
final value 80.474840
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 94.787393
iter 10 value 94.041181
iter 20 value 94.039583
iter 30 value 94.039113
iter 40 value 93.943571
iter 50 value 93.021201
iter 60 value 85.339279
iter 70 value 85.313385
iter 80 value 85.102327
iter 90 value 85.099450
iter 100 value 85.072815
final value 85.072815
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 135.424148
iter 10 value 117.767076
iter 20 value 117.752243
iter 30 value 117.314363
iter 40 value 116.024508
iter 50 value 109.544489
iter 60 value 107.228337
iter 70 value 106.038451
iter 80 value 102.791865
iter 90 value 101.713963
iter 100 value 100.946606
final value 100.946606
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 123.813792
iter 10 value 117.766756
iter 20 value 117.760134
iter 30 value 107.494377
iter 40 value 105.168903
iter 50 value 105.053060
iter 60 value 104.570651
iter 70 value 103.498478
final value 103.483226
converged
Fitting Repeat 3
# weights: 507
initial value 119.422348
iter 10 value 107.421980
iter 20 value 103.089441
iter 30 value 102.038320
iter 40 value 101.598490
iter 50 value 101.590808
iter 60 value 101.164604
iter 70 value 101.030550
iter 80 value 101.022859
iter 90 value 100.935522
iter 100 value 100.268123
final value 100.268123
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 137.844682
iter 10 value 115.445798
iter 20 value 115.306150
iter 30 value 114.610973
iter 40 value 114.605403
final value 114.604423
converged
Fitting Repeat 5
# weights: 507
initial value 129.580406
iter 10 value 117.560362
iter 20 value 117.553789
iter 30 value 117.534600
iter 40 value 117.512140
final value 117.511996
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Apr 29 01:28:54 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
41.410 1.505 92.265
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.984 | 0.565 | 34.558 | |
| FreqInteractors | 0.433 | 0.023 | 0.455 | |
| calculateAAC | 0.034 | 0.001 | 0.035 | |
| calculateAutocor | 0.276 | 0.018 | 0.296 | |
| calculateCTDC | 0.079 | 0.002 | 0.081 | |
| calculateCTDD | 0.488 | 0.001 | 0.489 | |
| calculateCTDT | 0.136 | 0.002 | 0.138 | |
| calculateCTriad | 0.411 | 0.005 | 0.416 | |
| calculateDC | 0.089 | 0.005 | 0.094 | |
| calculateF | 0.316 | 0.001 | 0.316 | |
| calculateKSAAP | 0.097 | 0.006 | 0.103 | |
| calculateQD_Sm | 1.798 | 0.022 | 1.821 | |
| calculateTC | 1.478 | 0.157 | 1.636 | |
| calculateTC_Sm | 0.280 | 0.005 | 0.284 | |
| corr_plot | 35.773 | 0.477 | 36.255 | |
| enrichfindP | 0.529 | 0.043 | 11.192 | |
| enrichfind_hp | 0.070 | 0.001 | 1.272 | |
| enrichplot | 0.485 | 0.000 | 0.486 | |
| filter_missing_values | 0.001 | 0.000 | 0.002 | |
| getFASTA | 0.497 | 0.008 | 3.922 | |
| getHPI | 0.001 | 0.001 | 0.002 | |
| get_negativePPI | 0.003 | 0.001 | 0.003 | |
| get_positivePPI | 0.000 | 0.001 | 0.000 | |
| impute_missing_data | 0.002 | 0.002 | 0.004 | |
| plotPPI | 0.093 | 0.003 | 0.096 | |
| pred_ensembel | 13.184 | 0.130 | 11.950 | |
| var_imp | 33.465 | 0.535 | 34.012 | |