Multiple platform build/check report for BioC 3.20 - BUILD results for MQmetrics on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4756
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4514
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4441
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4406
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MQmetrics on taishan

To the developers/maintainers of the MQmetrics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MQmetrics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: MQmetrics

Version: 1.14.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MQmetrics

StartedAt: 2025-03-18 02:29:18 -0000 (Tue, 18 Mar 2025)

EndedAt: 2025-03-18 02:29:35 -0000 (Tue, 18 Mar 2025)

EllapsedTime: 17.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MQmetrics
###
##############################################################################
##############################################################################


* checking for file ‘MQmetrics/DESCRIPTION’ ... OK
* preparing ‘MQmetrics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MQmetrics.Rmd’ using rmarkdown

Quitting from MQmetrics.Rmd:183-190 [ratio]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'pushgrobvp' applied to an object of class "list"
---
Backtrace:
     ▆
  1. ├─MQmetrics::PlotProteinPeptideRatio(...)
  2. │ ├─grid::grid.draw(g)
  3. │ └─grid:::grid.draw.gTree(g)
  4. │   └─grDevices::recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
  5. ├─grid:::drawGTree(x)
  6. │ ├─grid::grid.draw(x$children[[i]], recording = FALSE)
  7. │ └─grid:::grid.draw.gTree(x$children[[i]], recording = FALSE)
  8. │   └─grDevices::recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
  9. ├─grid:::drawGTree(x)
 10. │ ├─grid::grid.draw(x$children[[i]], recording = FALSE)
 11. │ └─grid:::grid.draw.gTree(x$children[[i]], recording = FALSE)
 12. │   └─grDevices::recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
 13. └─grid:::drawGTree(x)
 14.   ├─grid:::preDraw(x)
 15.   └─grid:::preDraw.gTree(x)
 16.     └─grid:::pushvpgp(x)
 17.       └─grid:::pushgrobvp(x$vp)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MQmetrics.Rmd' failed with diagnostics:
no applicable method for 'pushgrobvp' applied to an object of class "list"
--- failed re-building ‘MQmetrics.Rmd’

SUMMARY: processing the following file failed:
  ‘MQmetrics.Rmd’

Error: Vignette re-building failed.
Execution halted