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This page was generated on 2024-09-24 11:46 -0400 (Tue, 24 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4448
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4455
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4453
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4486
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4433
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4432
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1440/2260HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmnipathR 3.13.25  (landing page)
Denes Turei
Snapshot Date: 2024-09-23 14:00 -0400 (Mon, 23 Sep 2024)
git_url: https://git.bioconductor.org/packages/OmnipathR
git_branch: devel
git_last_commit: d07da8c
git_last_commit_date: 2024-09-07 11:02:07 -0400 (Sat, 07 Sep 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    ERROR  
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    ERROR  

BUILD BIN results for OmnipathR on lconway

To the developers/maintainers of the OmnipathR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OmnipathR
Version: 3.13.25
Command: rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.13.25.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir
StartedAt: 2024-09-24 01:10:42 -0400 (Tue, 24 Sep 2024)
EndedAt: 2024-09-24 01:11:11 -0400 (Tue, 24 Sep 2024)
EllapsedTime: 29.0 seconds
RetCode: 0
Status:   OK  
PackageFile: OmnipathR_3.13.25.tgz
PackageFileSize: 3.205 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.13.25.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OmnipathR.buildbin-libdir OmnipathR_3.13.25.tar.gz'
>>>>>>> 

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:05] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] Contains 1 files.
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-09-24 01:11:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:05] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:06] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:09] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Contains 1 files.
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:09] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-09-24 01:11:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:10] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.20-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-09-24 01:11:10] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-09-24 01:11:10] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)