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This page was generated on 2026-04-29 10:16 -0400 (Wed, 29 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4988
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4694
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1810/2415HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RESOLVE 1.14.0  (landing page)
Luca De Sano
Snapshot Date: 2026-04-28 14:14 -0400 (Tue, 28 Apr 2026)
git_url: https://git.bioconductor.org/packages/RESOLVE
git_branch: RELEASE_3_23
git_last_commit: 67c8e26
git_last_commit_date: 2026-04-28 08:59:14 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  YES
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  YES
See other builds for RESOLVE in R Universe.


CHECK results for RESOLVE on kjohnson3

To the developers/maintainers of the RESOLVE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RESOLVE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RESOLVE
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.14.0.tar.gz
StartedAt: 2026-04-28 23:17:32 -0400 (Tue, 28 Apr 2026)
EndedAt: 2026-04-28 23:23:49 -0400 (Tue, 28 Apr 2026)
EllapsedTime: 377.1 seconds
RetCode: 0
Status:   OK  
CheckDir: RESOLVE.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.14.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/RESOLVE.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-29 03:17:33 UTC
* using option ‘--no-vignettes’
* checking for file ‘RESOLVE/DESCRIPTION’ ... OK
* this is package ‘RESOLVE’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RESOLVE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
signaturesSignificance  60.872  0.059  61.127
signaturesCV            46.428  0.086  46.865
signaturesDecomposition 33.367  0.051  33.528
signaturesAssignment    18.703  0.044  18.835
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RESOLVE.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RESOLVE
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘RESOLVE’ ...
** this is package ‘RESOLVE’ version ‘1.14.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RESOLVE)

Tests output

RESOLVE.Rcheck/tests/testthat.Rout


R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.setenv("R_TESTS" = "")
> 
> library("testthat")
> library("RESOLVE")
> 
> test_check("RESOLVE")
[ FAIL 0 | WARN 200 | SKIP 0 | PASS 6 ]

[ FAIL 0 | WARN 200 | SKIP 0 | PASS 6 ]
> 
> proc.time()
   user  system elapsed 
 87.176   0.380  87.973 

Example timings

RESOLVE.Rcheck/RESOLVE-Ex.timings

nameusersystemelapsed
associationAlterations0.2470.0090.256
associationPrognosis0.0610.0010.062
associationSignatures0.4570.0020.462
getCNCounts0.0040.0010.004
getIDCounts2.1500.1042.323
getMNVCounts3.9240.0133.962
getSBSCounts0.4030.2271.872
groupsCNPlot1.0690.0061.076
groupsCXPlot0.6640.0100.675
groupsIDPlot1.9310.0121.957
groupsMNVPlot1.3170.0211.340
groupsSBSPlot1.1770.0051.183
patientsCNPlot0.5480.0010.549
patientsCXPlot0.2610.0010.262
patientsIDPlot0.8730.0030.878
patientsMNVPlot0.5770.0020.580
patientsSBSPlot0.3760.0010.377
signaturesAssignment18.703 0.04418.835
signaturesCNPlot0.8080.0050.814
signaturesCV46.428 0.08646.865
signaturesCXPlot0.3960.0020.406
signaturesClustering4.1630.0134.179
signaturesDecomposition33.367 0.05133.528
signaturesIDPlot1.2340.0031.238
signaturesMNVPlot0.8060.0020.813
signaturesSBSPlot0.5180.0020.520
signaturesSignificance60.872 0.05961.127