| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-03-20 12:11 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1723/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RepViz 1.22.0 (landing page) Thomas Faux, Asta Laiho
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
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To the developers/maintainers of the RepViz package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RepViz.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RepViz |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RepViz |
| StartedAt: 2025-03-18 06:57:11 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 06:58:02 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 51.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RepViz
###
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* checking for file ‘RepViz/DESCRIPTION’ ... OK
* preparing ‘RepViz’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RepViz.Rmd’ using rmarkdown
2025-03-18 06:57:43.905 R[53050:301850439] XType: Using static font registry.
Quitting from RepViz.Rmd:80-93 [plot_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.getFilters()`:
! biomaRt error: looks like we're connecting to incompatible version of BioMart.
---
Backtrace:
▆
1. └─RepViz::RepViz(...)
2. └─RepViz:::getBiomaRt(region, genome)
3. └─biomaRt::useMart(...)
4. └─biomaRt:::.useMart(...)
5. └─biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)
6. └─biomaRt:::.getFilters(mart, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RepViz.Rmd' failed with diagnostics:
biomaRt error: looks like we're connecting to incompatible version of BioMart.
--- failed re-building ‘RepViz.Rmd’
SUMMARY: processing the following file failed:
‘RepViz.Rmd’
Error: Vignette re-building failed.
Execution halted