Multiple platform build/check report for BioC 3.23 - BUILD BIN results for annmap on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4988
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"	4694
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for annmap on kjohnson3

To the developers/maintainers of the annmap package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/annmap.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: annmap

Version: 1.54.0

Command: rm -rf annmap.buildbin-libdir && mkdir annmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh annmap_1.54.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R annmap.buildbin-libdir

StartedAt: 2026-04-29 00:33:03 -0400 (Wed, 29 Apr 2026)

EndedAt: 2026-04-29 00:33:13 -0400 (Wed, 29 Apr 2026)

EllapsedTime: 10.2 seconds

RetCode: 0

Status: OK

PackageFile: annmap_1.54.0.tgz

PackageFileSize: 1.288 MiB

Command output

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### Running command:
###
###   rm -rf annmap.buildbin-libdir && mkdir annmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh annmap_1.54.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R annmap.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=annmap.buildbin-libdir annmap_1.54.0.tar.gz'
>>>>>>> 

* installing *source* package ‘annmap’ ...
** this is package ‘annmap’ version ‘1.54.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘probesetInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘probeInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘proteinInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘domainInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘geneInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘transcriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘exonInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estGeneInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estTranscriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estExonInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘predictionTranscriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (annmap)