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This page was generated on 2025-02-03 12:11 -0500 (Mon, 03 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4494
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4517
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4469
taishanLinux (openEuler 24.03 LTS)aarch644.4.2 (2024-10-31) -- "Pile of Leaves" 4400
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 152/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
beadarray 2.56.0  (landing page)
Mark Dunning
Snapshot Date: 2025-01-30 13:00 -0500 (Thu, 30 Jan 2025)
git_url: https://git.bioconductor.org/packages/beadarray
git_branch: RELEASE_3_20
git_last_commit: 3728fd3
git_last_commit_date: 2024-10-29 09:25:42 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for beadarray on taishan

To the developers/maintainers of the beadarray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beadarray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: beadarray
Version: 2.56.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray
StartedAt: 2025-01-30 21:47:25 -0000 (Thu, 30 Jan 2025)
EndedAt: 2025-01-30 21:52:03 -0000 (Thu, 30 Jan 2025)
EllapsedTime: 278.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray
###
##############################################################################
##############################################################################


* checking for file ‘beadarray/DESCRIPTION’ ... OK
* preparing ‘beadarray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ImageProcessing.Rmd’ using rmarkdown
--- finished re-building ‘ImageProcessing.Rmd’

--- re-building ‘beadarray.Rmd’ using rmarkdown
--- finished re-building ‘beadarray.Rmd’

--- re-building ‘beadlevel.Rmd’ using rmarkdown
--- finished re-building ‘beadlevel.Rmd’

--- re-building ‘beadsummary.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz'
Content type 'application/x-gzip' length 3658664 bytes (3.5 MB)
==================================================
downloaded 3.5 MB


Quitting from lines 427-434 [unnamed-chunk-32] (beadsummary.Rmd)
Error: processing vignette 'beadsummary.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [www.ncbi.nlm.nih.gov]
--- failed re-building ‘beadsummary.Rmd’

SUMMARY: processing the following file failed:
  ‘beadsummary.Rmd’

Error: Vignette re-building failed.
Execution halted