Pierrick Roger
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_20 |
| git_last_commit: e6b963e |
| git_last_commit_date: 2024-10-29 11:04:35 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:08 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.12.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.12.0.tar.gz |
| StartedAt: 2025-03-18 00:50:27 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 00:54:13 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 226.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.929 1.289 18.861
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-03-18 00:52:23.239][biodb::testContext]
biodb.INFO [2025-03-18 00:52:23.249][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:52:23.290][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-18 00:52:23.294][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:52:23.297][biodb::testContext]
biodb.INFO [2025-03-18 00:52:23.320][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:52:23.326][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-18 00:52:23.358][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:52:23.361][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-18 00:52:23.364][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-18 00:52:23.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.385][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-18 00:52:23.546][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-18 00:52:23.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.565][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-18 00:52:23.568][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-18 00:52:23.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.587][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-18 00:52:23.589][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-18 00:52:23.601][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-18 00:52:23.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.622][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-18 00:52:23.624][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-18 00:52:23.627][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-18 00:52:23.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.652][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-18 00:52:23.655][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-18 00:52:23.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.666][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-18 00:52:23.668][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-18 00:52:23.686][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-18 00:52:23.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.697][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-18 00:52:23.699][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-18 00:52:23.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.718][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-18 00:52:23.720][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-18 00:52:23.735][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-18 00:52:23.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.758][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:52:23.760][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-18 00:52:23.763][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-18 00:52:23.765][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-18 00:52:23.779][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-18 00:52:23.782][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-18 00:52:23.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.808][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-18 00:52:23.810][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-18 00:52:23.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.829][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-18 00:52:23.832][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-18 00:52:23.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.852][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-18 00:52:23.856][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-18 00:52:23.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.877][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-18 00:52:23.880][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-18 00:52:23.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.900][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-18 00:52:23.913][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-18 00:52:23.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.922][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:52:23.934][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-18 00:52:23.958][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-18 00:52:23.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.967][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-18 00:52:23.969][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-18 00:52:23.971][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-18 00:52:23.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:23.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:23.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:23.989][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-18 00:52:24.174][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.264][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-18 00:52:24.266][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.268][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:52:24.282][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.284][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.286][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.289][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.303][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:52:24.305][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:52:24.308][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.310][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-18 00:52:24.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:52:24.328][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.331][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.333][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:52:24.333][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:52:24.333][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:52:24.333][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:52:24.333][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:52:24.346][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:52:24.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.354][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:52:24.369][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.394][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.397][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.399][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:52:24.409][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:52:24.412][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.414][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.417][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-18 00:52:24.430][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.432][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:52:24.434][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.447][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:52:24.450][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.452][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.455][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.469][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.472][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:52:24.475][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:52:24.478][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.490][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-18 00:52:24.493][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:52:24.495][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.498][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.510][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:52:24.510][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:52:24.510][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:52:24.510][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:52:24.510][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:52:24.517][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:52:24.519][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.521][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.524][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:52:24.536][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.538][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.540][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.543][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.558][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:52:24.560][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:52:24.563][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.565][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.579][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-18 00:52:24.583][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.585][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-18 00:52:24.587][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.599][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:52:24.603][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.605][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.618][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.621][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.623][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:52:24.626][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:52:24.637][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.640][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-18 00:52:24.642][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:52:24.645][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.659][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.661][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.664][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:52:24.677][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.680][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:52:24.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.703][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.705][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.708][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:52:24.718][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:52:24.721][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.724][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.727][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-18 00:52:24.739][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.741][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:52:24.744][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.757][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:52:24.760][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.763][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.766][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.770][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.773][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:52:24.778][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:52:24.781][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.784][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-18 00:52:24.786][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:52:24.811][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.814][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:24.816][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.819][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:52:24.833][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.835][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.837][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:52:24.840][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:24.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:24.860][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:52:24.863][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.872][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:52:24.874][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:52:24.877][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:24.880][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:52:24.898][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:52:24.900][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:24.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:24.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:24.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:24.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:24.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:24.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:24.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:24.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:24.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:24.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:24.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:24.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:24.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:24.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:24.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:24.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:24.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:24.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:24.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:24.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:24.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:25.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:25.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:25.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:25.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:25.382][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-18 00:52:25.406][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-18 00:52:25.412][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-18 00:52:25.416][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-18 00:52:25.429][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:52:25.434][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-18 00:52:25.450][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-18 00:52:25.454][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-18 00:52:25.469][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-18 00:52:25.474][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-18 00:52:25.488][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:52:25.493][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-18 00:52:25.507][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-18 00:52:25.512][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-18 00:52:25.516][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-18 00:52:25.533][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-18 00:52:25.538][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-18 00:52:25.556][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-18 00:52:25.560][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:52:25.574][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-18 00:52:25.578][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-18 00:52:25.582][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-18 00:52:25.596][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-18 00:52:25.601][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-18 00:52:25.617][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-18 00:52:25.623][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-18 00:52:25.636][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-18 00:52:25.653][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-18 00:52:25.658][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-18 00:52:25.663][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-18 00:52:25.668][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-18 00:52:25.686][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-18 00:52:25.691][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-18 00:52:25.705][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-18 00:52:25.709][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-18 00:52:25.714][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-18 00:52:25.736][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-18 00:52:25.740][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-18 00:52:25.781][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-18 00:52:25.785][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-18 00:52:25.789][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-18 00:52:25.794][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-18 00:52:25.802][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-18 00:52:25.806][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-18 00:52:25.810][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-18 00:52:25.824][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-18 00:52:25.829][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-18 00:52:25.848][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-18 00:52:25.852][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-18 00:52:25.867][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-18 00:52:25.871][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-18 00:52:25.875][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-18 00:52:25.890][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-18 00:52:25.895][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-18 00:52:25.899][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-18 00:52:25.903][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-18 00:52:25.924][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-18 00:52:25.943][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-18 00:52:25.956][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-18 00:52:25.967][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-18 00:52:25.972][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-18 00:52:25.976][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-18 00:52:25.987][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-18 00:52:25.993][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-18 00:52:26.009][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-18 00:52:26.016][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-18 00:52:26.039][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:52:26.043][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:52:26.046][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-18 00:52:26.055][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-18 00:52:26.058][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-18 00:52:26.074][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-18 00:52:26.078][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-18 00:52:26.082][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-18 00:52:26.096][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-18 00:52:26.101][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-18 00:52:26.116][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-18 00:52:26.120][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-18 00:52:26.138][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-18 00:52:26.141][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-18 00:52:26.145][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-18 00:52:26.160][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-18 00:52:26.166][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-18 00:52:26.199][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-18 00:52:26.203][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:52:26.223][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:52:26.226][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.230][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:52:26.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:26.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:26.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:26.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:26.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:26.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:26.862][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-18 00:52:26.889][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-18 00:52:26.894][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:26.896][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-18 00:52:26.909][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:26.911][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:52:26.913][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:26.916][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:52:26.918][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:26.927][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-18 00:52:26.930][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-18 00:52:26.934][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:52:26.936][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:26.948][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-18 00:52:26.951][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-18 00:52:26.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-18 00:52:26.965][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-18 00:52:26.967][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:52:26.967][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:52:26.967][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:52:26.970][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-18 00:52:26.972][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:26.974][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:26.988][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:52:26.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:52:26.994][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:52:26.996][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:52:27.008][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-18 00:52:27.008][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-18 00:52:27.011][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:52:27.013][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:52:27.015][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-18 00:52:27.030][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-18 00:52:27.030][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-18 00:52:27.058][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:52:27.069][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:52:27.073][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-18 00:52:27.076][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:52:27.096][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:52:27.100][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:52:27.189][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-18 00:52:27.191][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-18 00:52:27.209][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-18 00:52:27.228][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-18 00:52:27.247][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:52:27.250][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:52:27.253][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-18 00:52:27.255][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-18 00:52:27.297][biodb::testThat]
biodb.INFO [2025-03-18 00:52:27.300][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-03-18 00:52:27.323][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:27.325][biodb::testThat]
biodb.TRACE[2025-03-18 00:52:27.343][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-03-18 00:52:27.366][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:27.381][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:27.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:27.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:27.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:27.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:27.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:27.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:27.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:27.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:27.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:27.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.719][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:27.721][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:27.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:27.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:27.872][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:27.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:27.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:27.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:27.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:27.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:27.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.962][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:27.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:27.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:27.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:27.989][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:27.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:27.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.001][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:28.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.030][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:28.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:28.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.036][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.054][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:28.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:28.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:28.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:28.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.122][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:28.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:28.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.180][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:28.284][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:28.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:28.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:28.353][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:28.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.368][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:28.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:28.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:28.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:28.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:28.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:28.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:28.878][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-03-18 00:52:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:28.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:28.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:28.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:28.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:29.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:29.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:29.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:29.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:29.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:29.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-18 00:52:29.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-18 00:52:29.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.232][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-18 00:52:29.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-18 00:52:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-18 00:52:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-18 00:52:29.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-18 00:52:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-18 00:52:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.838][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.867][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:29.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:30.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:30.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:30.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:30.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:30.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:30.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.178][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:30.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:30.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:30.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:30.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:30.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.308][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:30.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:30.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:30.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.471][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.473][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.488][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:30.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:30.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:30.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.772][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:30.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:30.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.923][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.117][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:31.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:31.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:31.245][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:31.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.249][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:31.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:31.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:31.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:31.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:31.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:31.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:31.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:31.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.679][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:31.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:31.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.735][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:31.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:31.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:31.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:31.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:31.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:31.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:31.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:31.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.952][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:31.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:31.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.971][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-18 00:52:31.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:31.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:31.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:31.996][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:31.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:32.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:32.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:32.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.052][ef$get] fields variable is a list.
biodb.INFO [2025-03-18 00:52:32.076][biodb::testThat]
biodb.INFO [2025-03-18 00:52:32.079][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-18 00:52:32.081][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:32.084][biodb::testThat]
biodb.DEBUG[2025-03-18 00:52:32.146][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-03-18 00:52:32.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:32.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2025-03-18 00:52:32.188][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:32.191][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2025-03-18 00:52:32.195][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:32.291][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:32.294][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:32.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:32.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:32.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:32.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:32.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:32.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:32.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:32.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:32.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:32.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:32.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.637][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:32.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:32.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:32.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:32.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:32.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:32.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:32.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:32.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:32.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.824][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:32.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:32.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.871][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:32.883][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:32.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:32.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:32.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:32.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:32.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:32.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:32.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:32.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:33.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.040][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:33.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:33.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:33.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:33.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:33.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:33.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:33.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:33.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:33.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:33.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:33.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:33.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:33.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:33.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:33.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:33.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:33.348][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-03-18 00:52:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-18 00:52:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-18 00:52:33.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-18 00:52:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-18 00:52:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-18 00:52:33.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-18 00:52:33.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-18 00:52:33.500][biodb::testThat]
biodb.INFO [2025-03-18 00:52:33.507][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-18 00:52:33.510][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:33.512][biodb::testThat]
biodb.TRACE[2025-03-18 00:52:33.528][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:33.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:33.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.534][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:33.537][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-03-18 00:52:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:33.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:33.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:33.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:33.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:33.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:33.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:33.765][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-03-18 00:52:33.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-18 00:52:33.898][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:34.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-18 00:52:34.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:34.019][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-18 00:52:34.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:34.177][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:34.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:34.183][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:34.193][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-18 00:52:34.209][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-03-18 00:52:34.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:34.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:34.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:34.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:34.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:34.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:34.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:34.339][ef$get] fields variable is a list.
biodb.INFO [2025-03-18 00:52:34.352][biodb::testThat]
biodb.INFO [2025-03-18 00:52:34.354][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-03-18 00:52:34.376][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:34.379][biodb::testThat]
biodb.TRACE[2025-03-18 00:52:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:34.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:34.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:34.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:34.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:34.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:34.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:34.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:34.948][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:34.961][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-03-18 00:52:35.033][biodb::testThat]
biodb.INFO [2025-03-18 00:52:35.077][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-03-18 00:52:35.080][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:35.084][biodb::testThat]
biodb.TRACE[2025-03-18 00:52:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:35.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:35.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:35.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-18 00:52:35.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-18 00:52:35.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-18 00:52:35.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-18 00:52:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:35.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:35.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:35.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-18 00:52:35.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-18 00:52:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-18 00:52:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-18 00:52:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-18 00:52:35.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-18 00:52:35.962][biodb::testThat]
biodb.INFO [2025-03-18 00:52:36.002][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-18 00:52:36.005][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:36.007][biodb::testThat]
biodb.INFO [2025-03-18 00:52:36.030][biodb::testThat]
biodb.INFO [2025-03-18 00:52:36.033][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-18 00:52:36.036][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:36.039][biodb::testThat]
biodb.INFO [2025-03-18 00:52:36.066][biodb::testThat]
biodb.INFO [2025-03-18 00:52:36.083][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-18 00:52:36.096][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:36.098][biodb::testThat]
biodb.DEBUG[2025-03-18 00:52:36.110][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-03-18 00:52:37.679][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-03-18 00:52:38.653][biodb::testThat]
biodb.INFO [2025-03-18 00:52:38.674][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-18 00:52:38.677][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:38.679][biodb::testThat]
biodb.DEBUG[2025-03-18 00:52:39.131][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-03-18 00:52:39.618][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:39.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:39.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:39.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:39.627][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:39.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:39.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:39.634][ef$get] fields variable is a list.
biodb.INFO [2025-03-18 00:52:39.638][biodb::testThat]
biodb.INFO [2025-03-18 00:52:39.640][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-03-18 00:52:39.643][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:52:39.645][biodb::testThat]
biodb.TRACE[2025-03-18 00:52:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:39.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:39.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:39.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:40.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:40.080][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:40.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:40.087][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:40.102][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-18 00:52:40.543][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:40.564][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:40.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:40.570][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:40.587][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-03-18 00:52:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-18 00:52:40.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-18 00:52:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:40.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:40.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:40.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:40.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:40.843][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:40.846][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-18 00:52:40.849][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:40.853][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-18 00:52:40.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:40.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:40.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:40.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:40.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:40.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:40.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:40.929][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-03-18 00:52:41.223][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:41.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-03-18 00:52:41.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:41.240][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-03-18 00:52:41.243][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:41.247][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:41.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:41.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:41.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:41.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:41.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:41.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:41.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:41.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:41.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.296][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:41.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:41.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.326][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:41.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:41.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:41.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.407][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.419][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:41.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:41.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.424][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.425][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:41.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.438][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.444][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.449][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.459][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:41.461][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:41.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.471][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:41.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.481][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:41.483][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:41.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:41.507][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:41.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.510][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:41.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:41.659][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-03-18 00:52:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:41.690][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:41.695][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:41.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-18 00:52:41.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:41.701][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-18 00:52:41.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:41.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:41.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:41.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:41.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:41.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:41.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:41.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:41.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:41.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:41.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:41.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:41.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:41.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:41.780][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-03-18 00:52:41.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:41.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-03-18 00:52:41.793][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:41.796][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-03-18 00:52:41.799][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:41.801][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:41.808][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:41.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:41.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:41.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:41.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:41.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:41.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:41.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:41.842][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.862][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:41.865][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:41.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:41.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:41.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.889][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:41.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:41.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:41.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:41.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.940][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:41.941][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:41.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.959][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:41.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:41.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:41.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:41.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:41.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.008][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.010][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.023][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:42.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:42.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.027][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:42.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:42.100][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-03-18 00:52:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:42.153][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:42.159][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:42.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:42.163][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:42.164][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-18 00:52:42.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:42.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:42.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:42.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:42.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:42.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:42.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:42.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:42.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:42.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:42.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:42.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:42.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:42.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:42.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:42.230][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-03-18 00:52:42.231][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:42.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-03-18 00:52:42.236][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:42.238][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2025-03-18 00:52:42.239][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:42.241][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:42.242][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:42.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:42.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:42.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:42.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:42.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:42.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:42.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:42.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.276][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.285][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:42.286][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:42.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.291][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:42.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:42.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:42.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:42.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:42.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.310][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:42.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:42.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.316][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:42.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:42.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:42.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:42.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:42.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.361][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.369][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.371][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.378][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:42.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:42.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:42.448][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-03-18 00:52:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:42.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:42.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:42.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:42.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:42.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:42.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:42.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:42.505][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-03-18 00:52:42.508][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:42.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-03-18 00:52:42.534][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:42.538][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2025-03-18 00:52:42.540][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:42.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:42.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:42.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:42.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:42.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:42.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:42.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:42.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:42.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:42.571][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.594][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:42.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:42.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.597][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.599][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:42.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:42.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:42.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:42.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:42.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:42.617][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.621][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:42.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.624][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:42.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:42.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.642][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:42.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:42.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:42.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:42.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:42.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:42.763][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-03-18 00:52:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:42.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:42.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:42.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:42.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:42.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:42.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:42.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:42.819][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-03-18 00:52:42.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:42.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-03-18 00:52:42.824][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:42.828][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2025-03-18 00:52:42.830][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:42.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:42.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:42.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:42.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:42.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:42.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:42.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:42.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:42.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:42.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.877][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:42.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:42.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:42.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:42.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:42.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:42.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.910][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:42.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:42.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.918][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:42.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:42.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.924][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:42.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:42.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:42.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:42.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.935][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:42.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.950][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.952][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.962][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:42.963][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:42.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:43.044][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-03-18 00:52:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:43.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:43.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:43.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:43.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:43.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:43.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:43.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:43.116][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-03-18 00:52:43.120][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:43.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-03-18 00:52:43.125][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:43.128][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2025-03-18 00:52:43.131][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:43.132][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:43.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:43.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:43.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:43.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:43.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:43.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:43.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:43.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:43.152][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.164][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:43.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:43.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:43.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.174][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:43.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:43.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:43.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:43.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:43.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.216][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.227][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.238][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:43.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.276][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:43.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:43.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.297][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:43.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:43.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:43.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:43.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:43.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:43.415][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-03-18 00:52:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:43.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:43.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:43.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:43.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:43.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:43.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:43.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:43.461][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-03-18 00:52:43.463][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:43.465][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-03-18 00:52:43.466][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:43.468][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2025-03-18 00:52:43.470][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:43.474][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:43.476][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:43.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:43.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:43.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:43.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:43.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:43.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:43.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:43.497][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.502][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.509][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:43.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.513][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.514][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:43.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:43.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:43.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:43.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:43.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:43.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.534][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.551][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.552][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.584][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.595][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:43.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.601][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.621][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:43.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:43.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.643][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:43.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:43.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:43.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:43.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:43.762][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-03-18 00:52:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:43.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:43.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:43.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:43.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:43.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:43.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:43.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:43.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:43.844][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-03-18 00:52:43.846][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:43.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-03-18 00:52:43.852][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:43.855][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2025-03-18 00:52:43.856][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:43.858][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:43.861][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:43.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:43.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:43.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:43.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:43.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:43.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:43.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:43.910][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:43.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.936][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:43.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:43.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:43.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.951][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:43.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:43.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:43.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:43.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:43.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:43.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:43.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.010][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:44.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:44.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.016][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:44.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.020][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.042][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:44.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:44.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.072][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:44.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:44.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.086][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:44.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:44.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:44.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:44.206][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-03-18 00:52:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:44.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:44.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:44.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:44.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:44.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:44.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:44.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:44.279][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-03-18 00:52:44.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:44.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-03-18 00:52:44.285][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:44.288][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-03-18 00:52:44.301][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:44.304][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:44.308][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:44.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:44.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:44.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:44.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:44.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:44.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:44.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:44.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.357][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:44.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:44.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.375][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:44.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:44.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:44.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:44.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:44.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:44.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:44.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.428][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.429][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:44.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.435][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.444][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.447][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.473][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:44.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:44.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.487][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:44.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:44.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:44.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:44.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.510][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:44.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:44.642][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-03-18 00:52:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:44.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:44.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:44.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:44.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:44.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:44.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:44.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:44.698][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-03-18 00:52:44.700][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:44.702][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-03-18 00:52:44.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:44.708][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-03-18 00:52:44.710][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:44.713][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:44.715][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:44.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:44.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:44.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:44.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:44.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:44.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:44.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:44.751][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:44.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.791][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:44.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:44.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:44.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.811][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:44.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:44.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.831][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:44.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:44.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:44.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:44.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:44.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:44.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.000][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:45.002][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.007][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.086][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:45.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:45.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.126][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:45.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:45.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:45.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:45.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:45.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:45.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:45.407][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-03-18 00:52:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:45.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:45.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:45.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:45.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:45.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:45.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:45.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:45.525][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-03-18 00:52:45.527][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:45.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-03-18 00:52:45.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:45.554][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-03-18 00:52:45.557][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:45.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:45.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:45.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:45.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:45.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:45.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:45.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:45.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:45.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:45.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.660][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:45.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:45.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.727][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:45.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:45.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:45.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:45.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:45.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:45.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:45.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:45.868][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:45.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.906][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:45.909][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.970][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:45.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:45.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:45.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.005][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:46.011][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:46.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.015][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:46.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:46.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:46.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:46.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:46.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:46.326][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-03-18 00:52:46.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:46.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:46.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:46.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:46.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:46.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:46.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:46.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:46.454][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-03-18 00:52:46.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:46.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-03-18 00:52:46.473][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:46.483][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-03-18 00:52:46.486][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:46.489][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:46.492][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:46.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:46.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:46.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:46.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:46.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:46.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:46.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:46.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.604][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:46.606][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:46.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:46.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.645][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:46.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:46.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:46.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:46.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:46.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.713][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:46.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:46.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:46.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.824][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.827][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:46.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.846][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:46.874][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:46.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:46.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:46.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:46.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:46.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:46.979][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:46.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:46.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:46.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:47.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:47.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:47.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:47.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:47.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:47.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:47.375][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-03-18 00:52:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:47.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:47.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:47.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:47.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:47.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:47.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:47.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:47.535][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-03-18 00:52:47.539][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:47.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-03-18 00:52:47.559][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:47.581][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-03-18 00:52:47.585][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:47.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:47.606][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:47.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:47.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:47.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:47.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:47.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:47.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:47.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:47.691][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.733][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:47.735][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:47.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:47.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.776][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:47.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:47.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:47.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.838][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:47.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:47.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:47.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:47.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:47.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:47.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.944][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:47.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:47.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.042][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:48.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:48.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.097][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:48.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:48.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:48.144][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:48.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:48.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:48.405][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-03-18 00:52:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:48.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:48.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:48.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:48.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:48.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:48.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:48.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:48.547][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-03-18 00:52:48.564][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:48.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-03-18 00:52:48.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:48.575][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-03-18 00:52:48.579][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:48.582][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:48.584][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:48.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:48.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:48.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:48.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:48.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:48.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:48.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:48.650][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.672][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.712][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:48.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:48.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:48.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.749][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:48.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:48.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:48.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:48.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:48.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.800][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:48.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:48.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.822][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:48.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:48.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.853][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:48.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.860][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:48.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:48.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.940][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:48.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:48.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:48.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:48.987][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:48.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:48.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.001][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:49.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:49.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:49.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:49.235][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-03-18 00:52:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:49.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:49.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:49.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:49.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:49.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:49.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:49.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:49.319][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-03-18 00:52:49.322][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:49.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-03-18 00:52:49.329][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:49.338][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-03-18 00:52:49.341][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:49.343][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:49.346][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:49.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:49.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:49.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:49.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:49.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:49.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:49.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:49.378][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.380][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.394][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:49.395][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:49.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:49.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.409][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:49.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:49.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:49.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:49.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:49.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.434][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:49.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:49.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:49.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:49.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:49.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:49.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.464][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.466][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:49.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:49.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:49.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:49.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:49.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:49.576][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.613][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:49.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:49.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:49.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:49.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:49.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:49.889][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-03-18 00:52:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:49.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:49.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:49.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:49.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:49.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:49.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:49.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:49.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:49.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:49.959][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-03-18 00:52:49.960][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:49.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-03-18 00:52:49.964][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:49.967][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-03-18 00:52:49.973][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:49.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:49.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:49.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:49.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:49.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:49.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:49.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:49.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:50.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:50.004][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.014][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.029][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:50.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:50.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:50.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.058][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:50.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:50.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:50.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:50.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.086][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:50.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:50.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.151][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:50.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.160][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.170][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:50.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:50.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.197][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:50.198][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:50.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:50.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.211][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:50.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:50.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.216][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:50.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:50.447][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-03-18 00:52:50.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:50.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:50.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:50.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:50.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:50.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:50.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:50.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:50.484][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-03-18 00:52:50.485][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:50.488][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-03-18 00:52:50.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:50.494][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-03-18 00:52:50.495][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:50.497][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:50.499][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:50.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:50.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:50.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:50.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:50.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:50.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:50.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:50.522][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.528][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.537][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:50.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:50.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.541][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:50.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:50.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:50.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:50.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:50.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:50.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:50.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.597][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:50.598][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:50.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.604][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.606][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:50.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:50.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.622][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.637][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:50.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:50.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:50.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:50.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:50.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:50.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:50.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:50.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:50.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:50.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:50.772][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-03-18 00:52:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:50.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:50.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:50.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:50.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:50.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:50.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:50.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:50.810][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-03-18 00:52:50.811][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:50.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-03-18 00:52:50.819][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:50.821][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-03-18 00:52:50.824][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:50.826][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:50.828][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:50.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:50.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:50.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:50.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:50.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:50.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:50.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:50.847][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.851][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:50.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:50.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.861][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:50.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:50.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.876][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:50.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:50.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:50.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:50.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:50.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:50.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:50.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:50.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.930][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:50.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.944][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.960][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:50.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:50.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:50.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.974][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:50.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:50.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:50.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:50.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:50.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:50.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:51.084][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-03-18 00:52:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:51.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:51.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:51.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:51.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:51.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:51.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:51.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:51.123][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-03-18 00:52:51.124][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:51.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-03-18 00:52:51.128][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:51.130][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-03-18 00:52:51.131][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:51.134][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:51.137][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:51.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:51.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:51.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:51.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:51.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:51.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:51.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:51.156][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.169][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:51.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:51.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:51.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:51.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:51.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:51.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:51.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:51.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:51.231][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:51.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.233][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.234][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:51.236][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.239][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.265][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:51.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.278][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:51.280][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:51.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.282][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:51.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:51.294][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:51.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:51.412][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-03-18 00:52:51.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:51.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:51.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:51.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:51.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:51.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:51.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:51.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:51.451][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-03-18 00:52:51.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:51.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-03-18 00:52:51.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:51.462][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-03-18 00:52:51.464][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:51.467][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:51.469][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:51.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:51.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:51.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:51.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:51.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:51.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:51.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:51.552][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.570][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:51.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:51.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.583][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:51.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:51.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:51.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:51.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:51.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:51.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.621][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:51.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:51.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.637][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.646][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:51.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:51.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:51.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.691][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:51.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:51.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:51.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:51.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:51.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:51.781][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-03-18 00:52:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:51.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:51.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:51.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:51.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:51.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:51.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:51.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:51.829][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-03-18 00:52:51.830][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:51.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-03-18 00:52:51.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:51.838][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-03-18 00:52:51.841][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:51.844][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:51.845][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:51.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:51.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:51.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:51.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:51.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:51.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:51.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:51.866][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:51.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:51.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:51.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:51.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:51.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:51.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.892][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:51.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:51.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:51.906][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:51.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:51.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:51.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.933][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:51.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:51.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:51.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.969][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:51.971][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.984][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:51.985][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:51.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:51.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:52.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.004][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:52.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:52.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:52.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.096][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-03-18 00:52:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.155][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:52.160][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:52.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:52.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:52.170][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-18 00:52:52.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:52.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:52.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:52.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:52.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:52.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:52.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:52.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:52.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:53.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:53.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:53.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:53.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:53.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:53.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:53.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:53.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:53.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:53.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:53.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:53.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:53.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:53.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:53.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:53.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:53.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:53.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:53.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:53.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:53.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:53.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:53.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:53.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:53.339][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:53.342][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-03-18 00:52:53.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:53.349][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-03-18 00:52:53.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:53.393][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:53.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-03-18 00:52:53.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:53.401][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-03-18 00:52:53.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:53.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:53.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:53.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:53.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:53.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:53.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:53.432][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-03-18 00:52:53.434][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:53.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-03-18 00:52:53.443][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:53.447][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-03-18 00:52:53.449][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:53.452][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:53.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:53.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:53.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:53.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:53.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:53.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:53.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:53.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:53.490][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:53.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.499][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:53.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.511][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:53.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:53.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:53.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:53.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.529][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:53.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.536][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:53.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:53.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:53.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:53.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:53.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:53.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.601][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:53.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.618][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:53.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:53.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.641][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.658][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:53.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:53.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:53.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.681][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:53.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:53.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:53.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:53.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:53.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.710][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:53.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:53.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:53.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:53.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:53.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:54.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:54.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:54.669][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-03-18 00:52:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:54.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:54.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:54.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:54.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:54.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:54.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:54.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:54.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:54.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:54.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:54.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:54.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:54.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:54.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:52:54.810][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-03-18 00:52:54.812][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:52:54.815][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-03-18 00:52:54.818][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:54.829][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-03-18 00:52:54.831][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:52:54.834][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:52:54.837][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:52:54.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:54.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:54.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:54.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:54.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:54.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:54.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:54.877][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:54.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:54.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.911][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:54.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:54.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:52:54.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:52:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.945][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:54.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:54.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.952][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:52:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:52:54.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:54.977][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:54.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:54.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:52:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:52:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:55.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:55.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.154][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:52:55.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:52:55.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:55.314][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:52:55.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.344][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:55.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:55.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:52:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:52:55.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.400][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.432][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:55.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:55.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.443][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:52:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:52:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.483][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:55.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:55.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:52:55.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:52:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:55.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:55.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:52:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:52:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:55.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:55.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:52:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:52:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:55.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:55.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:55.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:55.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:55.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:52:55.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:52:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:55.926][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-03-18 00:52:55.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:55.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:55.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:56.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:56.080][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:56.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:56.087][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:56.100][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-18 00:52:56.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:56.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:56.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:56.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:56.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:56.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:56.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:56.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:56.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:56.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:56.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:56.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:56.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:56.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:56.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:56.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:56.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:56.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:56.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:56.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:56.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:56.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:56.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:56.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:56.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:56.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:56.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:56.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:56.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:56.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:56.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:56.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:56.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:56.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:56.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:56.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:56.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:56.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:56.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:56.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:56.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:56.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:56.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:56.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:56.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:56.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:56.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:56.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:57.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:57.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:57.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:57.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:57.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:57.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:57.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:57.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:57.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:58.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:58.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:58.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:58.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:58.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:58.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:58.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:58.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:58.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:58.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:58.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:58.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:58.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:58.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:58.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:58.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:58.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:58.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:58.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:58.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:58.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:58.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:58.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:58.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:58.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:58.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:58.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:58.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:58.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:58.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:58.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:58.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:58.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:58.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:58.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:58.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:58.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:58.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:58.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:58.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:58.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:58.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:58.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:58.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:58.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:58.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:58.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:52:58.872][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:52:58.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-18 00:52:58.891][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:52:58.895][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-18 00:52:58.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:58.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:58.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:58.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:58.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:58.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:58.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:58.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:58.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:59.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:52:59.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:52:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:52:59.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:52:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:52:59.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:52:59.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:52:59.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:52:59.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:52:59.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:52:59.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:52:59.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:00.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:00.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:00.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:00.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:00.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:00.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:00.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:00.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:00.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:00.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:01.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:01.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:01.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:01.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:01.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:01.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:01.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:01.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:01.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:01.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:01.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:01.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:01.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:01.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-18 00:53:01.412][biodb::testThat]
biodb.INFO [2025-03-18 00:53:01.415][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-03-18 00:53:01.418][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:01.421][biodb::testThat]
biodb.TRACE[2025-03-18 00:53:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-18 00:53:01.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-18 00:53:01.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:01.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:01.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:01.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:01.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:01.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:01.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:01.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:01.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:01.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:01.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-18 00:53:01.643][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:01.677][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-18 00:53:01.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:01.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:01.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:01.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:01.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:01.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:01.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:01.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:01.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:01.850][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:01.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-18 00:53:01.858][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:01.887][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-18 00:53:01.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:01.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:01.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:01.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:01.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:01.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:01.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:01.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:02.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:02.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:02.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:02.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:02.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:02.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:02.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:02.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:02.187][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-18 00:53:02.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:02.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:02.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:02.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:02.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:02.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:02.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:02.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.317][private$selectFields]
biodb.TRACE[2025-03-18 00:53:02.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:02.336][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:02.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.396][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.430][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.433][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-18 00:53:02.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:02.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:02.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:02.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:02.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:02.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:02.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:02.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.731][private$selectFields]
biodb.TRACE[2025-03-18 00:53:02.733][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:02.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:02.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.802][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:02.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.824][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.842][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:02.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:02.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-18 00:53:02.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:02.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:02.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:02.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:02.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:02.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:02.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:03.039][private$selectFields]
biodb.TRACE[2025-03-18 00:53:03.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:03.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:03.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:03.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:03.116][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:03.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-18 00:53:03.238][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-18 00:53:03.250][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-18 00:53:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:03.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:03.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:03.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:03.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:03.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:03.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:03.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:03.745][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:03.756][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:03.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-18 00:53:03.763][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:03.776][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-18 00:53:03.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:03.815][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:03.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-18 00:53:03.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:03.832][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-18 00:53:03.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:03.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:03.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:03.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:03.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:03.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:03.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:03.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:03.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:03.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:03.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:04.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:04.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:04.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:04.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:04.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:04.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:04.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:04.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:04.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:04.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:04.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:04.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:04.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:04.372][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-18 00:53:04.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:04.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:04.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:04.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:04.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:04.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:04.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:04.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:04.654][private$selectFields]
biodb.TRACE[2025-03-18 00:53:04.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:04.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:04.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:04.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.716][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.736][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:04.751][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:04.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.774][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:04.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:04.859][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-18 00:53:04.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:04.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:04.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:04.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:04.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:04.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:04.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.169][private$selectFields]
biodb.TRACE[2025-03-18 00:53:05.184][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:05.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:05.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.210][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.333][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:05.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.400][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-18 00:53:05.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:05.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:05.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:05.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:05.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:05.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:05.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:05.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.519][private$selectFields]
biodb.TRACE[2025-03-18 00:53:05.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:05.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:05.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.571][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.587][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:05.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.606][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-18 00:53:05.684][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-18 00:53:05.687][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-18 00:53:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:05.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-18 00:53:05.773][biodb::testThat]
biodb.INFO [2025-03-18 00:53:05.775][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-03-18 00:53:05.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:05.780][biodb::testThat]
biodb.TRACE[2025-03-18 00:53:05.797][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-18 00:53:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-18 00:53:05.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:05.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:05.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:05.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:05.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:05.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:05.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:05.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:05.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:05.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:05.957][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:05.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:05.979][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-18 00:53:05.997][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:06.000][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-18 00:53:06.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:06.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:06.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:06.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:06.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:06.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:06.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:06.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:06.160][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:06.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-18 00:53:06.182][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:06.185][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-18 00:53:06.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:06.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:06.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:06.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:06.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:06.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:06.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:06.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:06.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:06.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:06.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:06.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:06.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:06.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:06.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:06.505][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-18 00:53:06.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:06.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:06.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:06.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:06.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:06.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:06.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:06.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.609][private$selectFields]
biodb.TRACE[2025-03-18 00:53:06.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:06.613][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:06.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.692][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-18 00:53:06.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:06.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:06.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:06.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:06.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:06.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:06.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.849][private$selectFields]
biodb.TRACE[2025-03-18 00:53:06.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:06.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:06.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.887][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.911][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:06.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.932][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:06.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-18 00:53:07.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:07.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:07.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:07.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:07.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:07.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:07.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:07.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:07.112][private$selectFields]
biodb.TRACE[2025-03-18 00:53:07.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:07.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:07.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:07.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.142][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:07.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:07.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.205][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.208][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-18 00:53:07.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-18 00:53:07.301][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-18 00:53:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:07.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:07.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:07.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:07.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:07.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:07.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:07.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:07.546][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:07.567][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:07.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-18 00:53:07.583][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:07.586][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-18 00:53:07.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:07.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:07.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-18 00:53:07.627][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:07.629][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-18 00:53:07.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:07.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:07.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:07.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:07.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:07.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:07.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:07.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:07.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:07.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:07.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:07.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:07.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:07.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:07.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:07.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:07.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:07.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:07.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:07.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:07.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:07.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:07.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-18 00:53:07.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:07.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:07.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:07.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:07.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:07.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:07.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:07.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:07.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:07.973][private$selectFields]
biodb.TRACE[2025-03-18 00:53:07.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:07.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:07.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.031][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.046][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.055][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.058][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-18 00:53:08.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:08.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:08.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:08.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:08.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:08.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:08.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.187][private$selectFields]
biodb.TRACE[2025-03-18 00:53:08.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:08.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:08.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.215][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.222][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.230][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:08.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-18 00:53:08.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:08.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:08.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:08.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:08.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:08.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:08.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.319][private$selectFields]
biodb.TRACE[2025-03-18 00:53:08.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:08.323][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:08.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.364][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:08.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.376][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-18 00:53:08.427][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-18 00:53:08.431][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-18 00:53:08.465][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:08.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-18 00:53:08.490][biodb::testThat]
biodb.INFO [2025-03-18 00:53:08.498][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-03-18 00:53:08.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:08.503][biodb::testThat]
biodb.TRACE[2025-03-18 00:53:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-18 00:53:08.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-18 00:53:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:08.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:08.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:08.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:08.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:08.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:08.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:08.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:08.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:08.643][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:08.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-18 00:53:08.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:08.670][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-18 00:53:08.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:08.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:08.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:08.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:08.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:08.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:08.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:08.761][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:08.773][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:08.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-18 00:53:08.777][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:08.798][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-18 00:53:08.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:08.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:08.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:08.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:08.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:08.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:08.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:08.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:08.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:08.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:08.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:08.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:08.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:08.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:08.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:08.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:08.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:08.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:08.999][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-18 00:53:09.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:09.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:09.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:09.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:09.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:09.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:09.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:09.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.149][private$selectFields]
biodb.TRACE[2025-03-18 00:53:09.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:09.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:09.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.186][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.205][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.223][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.245][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:09.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-18 00:53:09.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:09.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:09.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:09.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:09.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:09.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:09.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.430][private$selectFields]
biodb.TRACE[2025-03-18 00:53:09.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:09.436][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:09.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.478][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.488][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:09.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-18 00:53:09.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:09.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:09.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:09.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:09.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:09.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:09.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:09.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.712][private$selectFields]
biodb.TRACE[2025-03-18 00:53:09.714][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:09.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:09.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.775][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:09.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.788][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.853][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-18 00:53:09.855][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-18 00:53:09.867][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-18 00:53:09.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:09.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:09.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:09.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:09.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:10.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:10.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:10.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:10.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:10.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:10.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:10.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:10.089][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:10.107][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:10.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-18 00:53:10.123][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:10.130][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-18 00:53:10.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:10.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:10.155][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-18 00:53:10.164][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:10.168][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-18 00:53:10.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:10.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:10.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:10.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:10.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:10.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:10.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:10.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:10.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:10.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:10.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:10.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:10.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:10.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:10.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:10.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:10.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:10.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:10.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:10.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:10.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:10.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:10.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:10.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:10.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:10.479][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-18 00:53:10.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:10.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:10.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:10.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:10.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:10.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:10.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.576][private$selectFields]
biodb.TRACE[2025-03-18 00:53:10.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:10.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:10.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.628][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-18 00:53:10.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:10.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:10.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:10.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:10.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:10.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:10.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:10.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.795][private$selectFields]
biodb.TRACE[2025-03-18 00:53:10.805][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:10.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:10.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.824][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.847][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.860][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.862][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-18 00:53:10.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:10.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:10.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:10.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:10.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:10.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:10.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:10.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.956][private$selectFields]
biodb.TRACE[2025-03-18 00:53:10.958][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-18 00:53:10.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-18 00:53:10.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.981][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-18 00:53:10.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:10.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:10.992][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:10.995][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-18 00:53:10.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:11.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:11.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:11.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:11.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:11.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:11.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-18 00:53:11.038][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-18 00:53:11.040][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-18 00:53:11.075][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:11.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-18 00:53:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:11.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-18 00:53:11.107][biodb::testThat]
biodb.INFO [2025-03-18 00:53:11.109][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-03-18 00:53:11.112][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:11.117][biodb::testThat]
biodb.DEBUG[2025-03-18 00:53:11.121][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-18 00:53:11.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:53:11.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-18 00:53:11.132][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-18 00:53:11.134][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-18 00:53:11.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:53:11.140][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-18 00:53:11.142][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-18 00:53:11.145][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-18 00:53:11.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:11.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:11.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:11.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:11.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:11.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:11.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:11.170][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2025-03-18 00:53:11.188][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-18 00:53:11.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-18 00:53:11.193][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2025-03-18 00:53:17.914][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2025-03-18 00:53:18.331][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-18 00:53:18.336][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2025-03-18 00:53:18.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2025-03-18 00:53:18.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2025-03-18 00:53:18.380][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-18 00:53:18.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:53:18.385][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:53:18.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:18.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:18.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:18.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:18.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:18.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:18.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:18.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.416][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.420][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.432][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:18.434][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:18.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:18.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:18.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:53:18.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:53:18.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:53:18.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:53:18.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.467][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:18.472][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:18.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.477][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.480][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:18.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:18.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:18.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:18.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.519][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.522][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:18.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:18.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.536][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.539][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:18.542][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:18.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:18.564][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:18.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:18.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:18.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:18.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:18.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:18.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:18.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:18.777][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-03-18 00:53:18.779][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-18 00:53:18.816][biodb::testThat]
biodb.INFO [2025-03-18 00:53:18.818][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-18 00:53:18.820][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:18.822][biodb::testThat]
biodb.DEBUG[2025-03-18 00:53:18.906][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-03-18 00:53:18.909][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-03-18 00:53:18.911][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-18 00:53:18.915][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2025-03-18 00:53:18.918][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2025-03-18 00:53:18.922][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-03-18 00:53:18.924][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:53:18.927][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-18 00:53:18.929][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-18 00:53:18.931][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-18 00:53:18.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:18.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:19.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:19.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:19.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:19.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:19.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:19.048][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2025-03-18 00:53:19.130][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-18 00:53:19.133][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-18 00:53:19.214][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2025-03-18 00:53:19.635][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2025-03-18 00:53:20.034][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-18 00:53:20.039][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2025-03-18 00:53:20.047][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.TRACE[2025-03-18 00:53:20.053][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml"
biodb.DEBUG[2025-03-18 00:53:20.057][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-18 00:53:20.060][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-03-18 00:53:20.063][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-03-18 00:53:20.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:20.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:20.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:20.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:20.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:20.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:20.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:20.126][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:20.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:20.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.153][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:20.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:20.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.162][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:53:20.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:53:20.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:53:20.223][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:53:20.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.241][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:20.244][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:20.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.248][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.276][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:20.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:20.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:20.290][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:20.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:20.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:20.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:20.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:20.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.320][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:20.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:20.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:20.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:20.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:20.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:20.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:20.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:20.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:20.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:20.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:20.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:20.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:20.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:20.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:20.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.648][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:20.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:20.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:53:20.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:53:20.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.722][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:53:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:53:20.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:53:20.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:53:20.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:53:20.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:53:20.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.797][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:20.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:20.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:20.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:20.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.843][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:20.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:20.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.862][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:20.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:20.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.887][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:20.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:20.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:20.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:20.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:20.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:20.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:20.973][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:20.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:20.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:20.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:20.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:20.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:21.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:21.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:21.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:21.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:21.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:21.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:21.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:21.110][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:21.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:21.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:21.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:21.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.144][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:21.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:21.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:21.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:53:21.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:53:21.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:53:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:53:21.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:53:21.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:53:21.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.199][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:53:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:53:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.209][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:21.211][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:21.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:21.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:21.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.228][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:21.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:21.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:21.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:21.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:21.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.265][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:21.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:21.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:21.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:21.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:21.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:21.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:21.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.316][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:21.331][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:21.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:21.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:21.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:21.493][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-03-18 00:53:21.497][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-18 00:53:21.499][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-03-18 00:53:21.520][biodb::testThat]
biodb.INFO [2025-03-18 00:53:21.522][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-03-18 00:53:21.524][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:21.529][biodb::testThat]
biodb.INFO [2025-03-18 00:53:21.586][biodb::testThat]
biodb.INFO [2025-03-18 00:53:21.588][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-03-18 00:53:21.589][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:21.591][biodb::testThat]
biodb.INFO [2025-03-18 00:53:21.608][biodb::testThat]
biodb.INFO [2025-03-18 00:53:21.609][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-03-18 00:53:21.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:21.613][biodb::testThat]
biodb.DEBUG[2025-03-18 00:53:21.617][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:21.621][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-18 00:53:21.623][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-18 00:53:21.626][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2025-03-18 00:53:22.262][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2025-03-18 00:53:22.819][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-18 00:53:22.822][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content"
biodb.TRACE[2025-03-18 00:53:22.830][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.request"
biodb.TRACE[2025-03-18 00:53:22.858][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:22.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:22.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:22.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:22.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:22.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:22.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:22.885][ef$get] fields variable is a list.
biodb.INFO [2025-03-18 00:53:22.888][biodb::testThat]
biodb.INFO [2025-03-18 00:53:22.894][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2025-03-18 00:53:22.897][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:22.899][biodb::testThat]
biodb.ERROR[2025-03-18 00:53:22.932][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-03-18 00:53:22.994][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-03-18 00:53:23.055][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-18 00:53:23.057][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-18 00:53:23.068][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-18 00:53:23.071][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-18 00:53:23.073][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:23.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:23.077][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:23.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:23.089][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-18 00:53:23.133][biodb::testContext]
biodb.INFO [2025-03-18 00:53:23.136][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:53:23.138][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-03-18 00:53:23.140][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:53:23.142][biodb::testContext]
biodb.INFO [2025-03-18 00:53:23.170][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:53:23.183][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-18 00:53:23.191][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:23.194][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-18 00:53:23.206][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-18 00:53:23.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.215][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-18 00:53:23.218][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-18 00:53:23.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.236][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-18 00:53:23.239][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-18 00:53:23.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.262][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-18 00:53:23.264][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-18 00:53:23.266][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-18 00:53:23.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.305][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-18 00:53:23.308][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-18 00:53:23.310][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-18 00:53:23.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.330][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-18 00:53:23.333][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-18 00:53:23.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.348][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-18 00:53:23.357][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-18 00:53:23.360][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-18 00:53:23.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.370][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-18 00:53:23.372][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-18 00:53:23.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.394][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-18 00:53:23.397][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-18 00:53:23.400][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-18 00:53:23.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.428][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:53:23.443][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-18 00:53:23.446][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-18 00:53:23.448][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-18 00:53:23.450][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-18 00:53:23.452][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-18 00:53:23.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.468][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-18 00:53:23.480][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-18 00:53:23.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.489][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-18 00:53:23.503][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-18 00:53:23.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.520][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-18 00:53:23.523][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-18 00:53:23.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.546][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-18 00:53:23.549][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-18 00:53:23.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.572][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-18 00:53:23.577][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-18 00:53:23.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.589][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:53:23.592][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-18 00:53:23.674][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-18 00:53:23.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.682][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-18 00:53:23.685][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-18 00:53:23.688][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-18 00:53:23.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:23.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:23.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:23.697][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-18 00:53:23.702][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:23.705][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-18 00:53:23.707][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.709][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:23.712][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.714][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:23.716][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:23.718][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:23.720][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:53:23.722][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:23.725][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.728][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-18 00:53:23.731][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:23.733][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:23.735][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.749][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:23.749][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:23.749][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:23.749][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:53:23.749][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:53:23.752][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:23.755][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:23.757][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:23.763][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:23.765][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:23.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:23.770][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:23.781][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:23.784][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:23.788][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:23.790][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:23.792][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:23.795][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-18 00:53:23.800][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:23.803][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:53:23.821][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.823][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:23.826][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.828][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:23.836][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:23.838][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:23.841][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:53:23.843][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:23.858][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.860][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-18 00:53:23.862][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:23.865][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:23.867][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.887][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:23.887][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:23.887][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:23.887][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:53:23.887][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:53:23.890][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:23.892][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:23.894][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:23.901][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:23.903][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:23.905][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:23.908][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:23.910][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:23.913][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:23.927][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:23.930][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:23.937][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:23.940][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-18 00:53:23.947][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.971][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-18 00:53:23.977][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.980][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:23.983][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:23.985][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:23.998][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:24.000][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:24.005][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:53:24.022][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:24.025][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:24.027][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-18 00:53:24.042][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:24.045][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.048][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:24.051][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.056][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:24.082][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:24.095][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:24.098][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:24.100][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:24.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:24.104][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:24.106][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.108][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:24.125][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:24.127][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:24.130][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.133][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-18 00:53:24.153][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:24.155][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:53:24.158][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:24.171][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:24.174][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:24.176][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:24.178][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:24.190][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:24.193][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:53:24.195][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:24.198][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:24.212][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-18 00:53:24.214][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:24.216][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.219][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:24.239][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.242][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:24.244][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:24.246][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:24.259][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:24.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:24.264][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:24.266][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:24.268][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.281][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:24.283][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:24.285][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:24.288][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:24.301][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:24.303][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:24.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:24.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:24.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:24.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:24.651][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-18 00:53:24.655][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-18 00:53:24.657][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-18 00:53:24.659][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-18 00:53:24.661][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:53:24.663][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-18 00:53:24.678][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-18 00:53:24.682][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-18 00:53:24.685][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-18 00:53:24.689][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-18 00:53:24.693][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:53:24.696][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-18 00:53:24.709][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-18 00:53:24.712][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-18 00:53:24.715][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-18 00:53:24.719][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-18 00:53:24.722][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-18 00:53:24.725][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-18 00:53:24.729][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:53:24.732][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-18 00:53:24.739][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-18 00:53:24.743][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-18 00:53:24.746][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-18 00:53:24.749][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-18 00:53:24.753][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-18 00:53:24.756][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-18 00:53:24.760][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-18 00:53:24.764][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-18 00:53:24.768][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-18 00:53:24.772][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-18 00:53:24.775][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-18 00:53:24.779][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-18 00:53:24.782][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-18 00:53:24.788][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-18 00:53:24.791][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-18 00:53:24.794][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-18 00:53:24.798][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-18 00:53:24.802][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-18 00:53:24.807][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-18 00:53:24.814][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-18 00:53:24.817][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-18 00:53:24.821][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-18 00:53:24.830][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-18 00:53:24.834][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-18 00:53:24.956][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-18 00:53:24.959][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-18 00:53:24.963][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-18 00:53:24.975][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-18 00:53:24.978][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-18 00:53:24.982][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-18 00:53:24.997][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-18 00:53:25.000][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-18 00:53:25.004][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-18 00:53:25.016][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-18 00:53:25.019][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-18 00:53:25.022][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-18 00:53:25.038][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-18 00:53:25.044][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-18 00:53:25.047][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-18 00:53:25.057][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-18 00:53:25.061][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-18 00:53:25.064][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-18 00:53:25.085][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-18 00:53:25.088][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-18 00:53:25.092][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-18 00:53:25.097][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-18 00:53:25.104][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:53:25.107][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:53:25.127][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-18 00:53:25.130][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-18 00:53:25.134][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-18 00:53:25.147][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-18 00:53:25.150][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-18 00:53:25.153][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-18 00:53:25.168][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-18 00:53:25.172][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-18 00:53:25.175][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-18 00:53:25.194][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-18 00:53:25.198][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-18 00:53:25.201][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-18 00:53:25.215][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-18 00:53:25.218][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-18 00:53:25.221][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-18 00:53:25.236][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-18 00:53:25.243][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:53:25.246][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:25.248][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.252][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:25.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:25.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:25.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:25.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:25.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:25.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:25.801][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-18 00:53:25.809][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-18 00:53:25.814][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:25.816][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-18 00:53:25.819][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:25.847][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:25.849][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:25.851][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:25.854][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:25.857][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-18 00:53:25.860][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-18 00:53:25.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:25.865][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:25.880][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-18 00:53:25.883][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-18 00:53:25.885][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-18 00:53:25.891][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:25.894][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:25.894][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:25.894][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:25.896][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-18 00:53:25.899][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:25.902][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:25.905][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:25.907][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:25.909][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:25.911][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:25.936][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-18 00:53:25.936][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-18 00:53:25.939][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:25.943][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:25.945][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:25.958][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-18 00:53:25.958][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-18 00:53:25.972][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:53:25.976][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:53:25.987][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-18 00:53:25.991][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:53:25.999][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:53:26.003][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:53:26.025][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-18 00:53:26.028][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-18 00:53:26.031][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-18 00:53:26.041][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-18 00:53:26.044][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:53:26.046][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:53:26.060][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-18 00:53:26.063][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-18 00:53:26.066][biodb::testThat]
biodb.INFO [2025-03-18 00:53:26.068][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2025-03-18 00:53:26.083][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:26.086][biodb::testThat]
biodb.DEBUG[2025-03-18 00:53:26.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-18 00:53:26.122][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-18 00:53:26.128][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:26.132][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-18 00:53:26.160][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:26.167][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-18 00:53:26.171][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:26.179][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-18 00:53:26.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:26.225][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.228][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-18 00:53:26.263][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:26.277][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-18 00:53:26.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:26.522][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.525][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-18 00:53:26.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:26.542][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-18 00:53:26.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.600][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:26.618][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-18 00:53:26.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:26.638][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-18 00:53:26.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:26.780][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.794][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-18 00:53:26.798][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:26.802][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-18 00:53:26.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:26.895][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-18 00:53:26.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:26.915][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-18 00:53:26.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:26.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:26.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:26.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:26.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:26.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:26.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:26.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:26.993][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:26.997][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2025-03-18 00:53:27.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:27.012][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2025-03-18 00:53:27.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:27.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:27.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:27.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:27.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:27.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:27.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-18 00:53:27.101][biodb::testThat]
biodb.INFO [2025-03-18 00:53:27.114][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2025-03-18 00:53:27.117][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:27.120][biodb::testThat]
biodb.DEBUG[2025-03-18 00:53:27.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:27.158][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-18 00:53:27.160][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-18 00:53:27.176][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-03-18 00:53:27.742][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-03-18 00:53:28.157][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-18 00:53:28.160][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2025-03-18 00:53:28.167][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2025-03-18 00:53:28.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:28.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:28.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:28.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:28.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:28.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:28.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:28.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:28.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-18 00:53:28.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-18 00:53:28.210][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-03-18 00:53:28.637][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-03-18 00:53:29.050][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-18 00:53:29.054][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2025-03-18 00:53:29.065][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2025-03-18 00:53:29.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:29.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:29.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:29.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:29.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:29.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-18 00:53:29.102][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-18 00:53:29.103][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-18 00:53:29.105][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-18 00:53:29.106][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-18 00:53:29.107][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:29.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:29.113][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:29.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:29.139][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-18 00:53:29.147][biodb::testContext]
biodb.INFO [2025-03-18 00:53:29.150][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:53:29.152][biodb::testContext] Test context - Test web services
biodb.INFO [2025-03-18 00:53:29.154][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:53:29.156][biodb::testContext]
biodb.INFO [2025-03-18 00:53:29.161][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:53:29.164][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-18 00:53:29.170][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:29.172][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-18 00:53:29.174][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-18 00:53:29.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.187][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-18 00:53:29.190][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-18 00:53:29.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.195][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-18 00:53:29.197][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-18 00:53:29.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.207][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-18 00:53:29.210][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-18 00:53:29.212][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-18 00:53:29.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.226][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-18 00:53:29.228][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-18 00:53:29.231][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-18 00:53:29.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.247][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-18 00:53:29.250][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-18 00:53:29.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.263][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-18 00:53:29.272][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-18 00:53:29.274][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-18 00:53:29.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.280][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-18 00:53:29.292][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-18 00:53:29.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.320][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-18 00:53:29.322][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-18 00:53:29.334][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-18 00:53:29.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.352][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:53:29.355][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-18 00:53:29.357][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-18 00:53:29.359][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-18 00:53:29.372][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-18 00:53:29.374][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-18 00:53:29.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.393][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-18 00:53:29.395][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-18 00:53:29.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.413][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-18 00:53:29.415][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-18 00:53:29.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.433][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-18 00:53:29.436][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-18 00:53:29.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.449][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-18 00:53:29.451][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-18 00:53:29.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.459][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-18 00:53:29.460][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-18 00:53:29.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.465][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:53:29.467][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-18 00:53:29.631][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-18 00:53:29.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.639][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-18 00:53:29.641][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-18 00:53:29.644][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-18 00:53:29.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:29.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:29.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:29.654][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-18 00:53:29.658][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.660][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-18 00:53:29.662][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.664][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:29.665][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.667][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.668][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.670][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.671][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:53:29.677][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:29.679][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.681][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-18 00:53:29.683][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:29.685][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.696][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.699][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:29.699][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:29.699][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:29.699][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:53:29.699][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:53:29.701][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:29.703][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:29.704][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:29.705][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:29.706][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:29.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:29.721][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.723][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.726][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:29.728][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:29.730][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.732][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.736][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-18 00:53:29.744][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.746][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:53:29.748][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.750][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:29.759][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.762][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.764][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.766][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.768][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:53:29.770][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:29.773][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.774][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-18 00:53:29.776][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:29.778][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.779][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.781][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:29.781][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:29.781][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:29.781][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:53:29.781][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:53:29.783][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:29.784][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:29.786][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:29.788][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:29.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:29.800][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:29.802][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.804][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.809][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:29.814][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:29.818][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.821][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.830][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-18 00:53:29.835][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.838][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-18 00:53:29.842][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.844][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:29.845][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.846][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.848][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.849][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.852][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:53:29.858][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:29.859][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.861][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-18 00:53:29.862][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:29.864][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.865][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.866][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.868][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:29.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:29.891][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:29.893][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:29.909][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:29.912][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:29.921][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.924][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.931][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:29.933][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:29.934][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.937][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.939][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-18 00:53:29.944][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.947][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:53:29.949][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.963][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:29.966][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.968][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.970][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.973][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:29.982][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:53:29.984][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:29.987][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:29.989][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-18 00:53:29.992][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:29.994][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.995][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:29.996][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:29.998][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:29.999][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:30.000][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:30.020][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:30.022][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:30.025][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:30.028][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:30.069][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:30.071][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:30.073][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:30.075][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:30.077][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:30.085][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:30.086][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.272][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-18 00:53:30.274][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-18 00:53:30.276][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-18 00:53:30.278][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-18 00:53:30.284][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:53:30.286][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-18 00:53:30.288][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-18 00:53:30.291][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-18 00:53:30.293][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-18 00:53:30.296][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-18 00:53:30.299][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:53:30.323][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-18 00:53:30.326][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-18 00:53:30.329][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-18 00:53:30.332][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-18 00:53:30.336][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-18 00:53:30.339][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-18 00:53:30.340][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-18 00:53:30.343][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:53:30.345][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-18 00:53:30.358][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-18 00:53:30.361][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-18 00:53:30.365][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-18 00:53:30.368][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-18 00:53:30.371][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-18 00:53:30.373][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-18 00:53:30.374][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-18 00:53:30.377][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-18 00:53:30.381][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-18 00:53:30.387][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-18 00:53:30.395][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-18 00:53:30.397][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-18 00:53:30.399][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-18 00:53:30.400][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-18 00:53:30.402][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-18 00:53:30.407][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-18 00:53:30.410][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-18 00:53:30.412][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-18 00:53:30.414][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-18 00:53:30.415][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-18 00:53:30.417][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-18 00:53:30.419][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-18 00:53:30.421][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-18 00:53:30.425][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-18 00:53:30.428][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-18 00:53:30.430][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-18 00:53:30.432][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-18 00:53:30.435][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-18 00:53:30.439][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-18 00:53:30.448][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-18 00:53:30.452][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-18 00:53:30.455][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-18 00:53:30.473][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-18 00:53:30.477][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-18 00:53:30.492][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-18 00:53:30.495][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-18 00:53:30.496][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-18 00:53:30.498][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-18 00:53:30.500][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-18 00:53:30.502][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-18 00:53:30.505][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-18 00:53:30.507][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-18 00:53:30.509][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-18 00:53:30.511][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-18 00:53:30.513][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-18 00:53:30.515][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-18 00:53:30.518][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:53:30.520][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:53:30.521][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-18 00:53:30.523][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-18 00:53:30.525][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-18 00:53:30.527][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-18 00:53:30.529][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-18 00:53:30.530][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-18 00:53:30.532][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-18 00:53:30.534][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-18 00:53:30.535][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-18 00:53:30.537][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-18 00:53:30.607][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-18 00:53:30.610][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-18 00:53:30.613][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-18 00:53:30.616][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-18 00:53:30.617][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-18 00:53:30.619][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-18 00:53:30.621][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:53:30.623][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:30.624][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.626][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:30.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:30.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:30.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:30.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:30.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:30.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:30.959][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-18 00:53:30.963][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-18 00:53:30.966][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:30.968][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-18 00:53:30.970][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:30.975][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:30.978][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:30.980][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:30.982][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:30.984][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-18 00:53:30.987][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-18 00:53:30.990][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:30.992][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:30.994][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-18 00:53:30.997][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-18 00:53:31.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-18 00:53:31.004][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:31.006][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:31.006][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:31.006][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:31.009][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-18 00:53:31.015][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:31.017][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:31.019][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:31.021][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:31.023][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:31.025][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:31.027][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-18 00:53:31.027][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-18 00:53:31.029][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:31.030][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:31.033][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:31.039][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-18 00:53:31.039][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-18 00:53:31.043][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:53:31.047][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:53:31.050][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-18 00:53:31.053][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:53:31.057][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:53:31.061][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:53:31.069][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-18 00:53:31.073][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-18 00:53:31.076][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-18 00:53:31.081][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-18 00:53:31.089][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:53:31.091][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:53:31.093][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-18 00:53:31.096][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-18 00:53:31.099][biodb::testThat]
biodb.INFO [2025-03-18 00:53:31.106][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-03-18 00:53:31.108][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:31.110][biodb::testThat]
biodb.DEBUG[2025-03-18 00:53:31.119][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-18 00:53:31.126][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:31.128][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-18 00:53:31.130][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:31.132][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-18 00:53:31.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:31.146][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-18 00:53:31.148][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-18 00:53:31.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-03-18 00:53:31.566][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-03-18 00:53:31.982][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-18 00:53:31.986][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2025-03-18 00:53:31.995][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2025-03-18 00:53:32.013][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-18 00:53:32.016][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-18 00:53:32.018][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-18 00:53:32.020][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-18 00:53:32.022][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:32.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:32.026][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:32.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:32.030][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-18 00:53:32.039][biodb::testContext]
biodb.INFO [2025-03-18 00:53:32.042][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:53:32.044][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-03-18 00:53:32.046][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-18 00:53:32.048][biodb::testContext]
biodb.INFO [2025-03-18 00:53:32.053][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:53:32.057][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-18 00:53:32.066][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:32.068][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-18 00:53:32.073][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-18 00:53:32.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.081][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-18 00:53:32.083][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-18 00:53:32.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.092][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-18 00:53:32.111][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-18 00:53:32.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.119][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-18 00:53:32.149][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-18 00:53:32.159][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-18 00:53:32.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.176][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-18 00:53:32.179][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-18 00:53:32.181][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-18 00:53:32.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.201][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-18 00:53:32.203][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-18 00:53:32.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.225][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-18 00:53:32.227][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-18 00:53:32.229][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-18 00:53:32.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.252][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-18 00:53:32.266][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-18 00:53:32.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.275][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-18 00:53:32.288][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-18 00:53:32.290][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-18 00:53:32.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.307][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:53:32.310][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-18 00:53:32.312][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-18 00:53:32.327][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-18 00:53:32.330][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-18 00:53:32.332][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-18 00:53:32.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.352][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-18 00:53:32.354][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-18 00:53:32.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.372][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-18 00:53:32.374][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-18 00:53:32.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.395][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-18 00:53:32.397][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-18 00:53:32.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.413][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-18 00:53:32.416][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-18 00:53:32.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.435][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-18 00:53:32.437][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-18 00:53:32.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.456][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-18 00:53:32.475][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-18 00:53:32.544][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-18 00:53:32.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.552][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-18 00:53:32.554][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-18 00:53:32.556][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-18 00:53:32.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:32.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:32.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:32.565][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-18 00:53:32.569][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.571][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-18 00:53:32.573][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.576][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:32.578][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.580][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.582][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.584][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.586][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:53:32.589][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:32.592][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.594][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-18 00:53:32.596][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:32.598][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.604][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.607][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:32.607][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:32.607][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:32.607][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:53:32.607][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:53:32.609][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:32.611][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:32.625][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:32.627][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:32.629][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:32.631][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:32.634][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.645][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.648][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:32.650][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:32.652][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.660][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.663][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-18 00:53:32.667][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.679][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:53:32.681][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.683][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:32.686][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.709][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.712][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.715][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.717][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:53:32.722][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:32.725][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.727][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-18 00:53:32.729][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:32.745][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.747][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.749][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:32.749][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:32.749][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:32.749][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-18 00:53:32.749][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-18 00:53:32.752][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:32.755][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:32.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:32.769][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:32.771][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:32.774][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:32.787][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.789][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.792][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:32.794][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:32.801][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.804][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.807][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-18 00:53:32.817][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.820][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-18 00:53:32.822][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.824][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:32.827][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.851][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.853][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.855][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.858][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-18 00:53:32.871][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:32.873][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.875][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-18 00:53:32.878][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:32.890][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.892][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.897][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.899][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:32.907][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:32.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:32.913][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:32.916][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:32.923][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:32.926][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.928][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.931][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:32.933][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:32.953][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.956][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:32.962][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-18 00:53:32.967][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.969][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-18 00:53:32.971][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.977][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:32.979][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:32.981][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.983][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:32.985][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-18 00:53:32.987][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-18 00:53:32.999][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:33.001][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:33.003][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-18 00:53:33.006][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:33.012][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:33.014][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:33.016][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:33.018][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-18 00:53:33.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:33.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:33.030][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:33.032][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:33.037][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:33.053][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:33.058][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:33.060][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:33.063][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:33.065][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:33.067][self$setPropertyValue]
biodb.DEBUG[2025-03-18 00:53:33.070][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:33.072][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.312][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-18 00:53:33.315][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-18 00:53:33.319][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-18 00:53:33.329][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-18 00:53:33.332][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:53:33.336][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-18 00:53:33.354][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-18 00:53:33.357][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-18 00:53:33.367][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-18 00:53:33.371][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-18 00:53:33.374][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:53:33.378][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-18 00:53:33.381][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-18 00:53:33.384][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-18 00:53:33.387][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-18 00:53:33.391][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-18 00:53:33.394][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-18 00:53:33.397][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-18 00:53:33.401][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:53:33.404][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-18 00:53:33.422][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-18 00:53:33.425][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-18 00:53:33.429][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-18 00:53:33.437][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-18 00:53:33.441][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-18 00:53:33.444][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-18 00:53:33.450][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-18 00:53:33.453][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-18 00:53:33.460][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-18 00:53:33.463][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-18 00:53:33.465][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-18 00:53:33.468][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-18 00:53:33.473][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-18 00:53:33.476][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-18 00:53:33.479][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-18 00:53:33.483][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-18 00:53:33.486][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-18 00:53:33.489][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-18 00:53:33.513][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-18 00:53:33.517][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-18 00:53:33.520][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-18 00:53:33.527][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-18 00:53:33.529][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-18 00:53:33.531][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-18 00:53:33.533][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-18 00:53:33.534][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-18 00:53:33.537][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-18 00:53:33.541][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-18 00:53:33.544][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-18 00:53:33.546][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-18 00:53:33.549][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-18 00:53:33.552][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-18 00:53:33.555][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-18 00:53:33.559][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-18 00:53:33.562][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-18 00:53:33.565][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-18 00:53:33.569][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-18 00:53:33.572][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-18 00:53:33.575][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-18 00:53:33.590][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-18 00:53:33.593][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-18 00:53:33.596][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-18 00:53:33.599][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-18 00:53:33.611][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-18 00:53:33.616][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-18 00:53:33.630][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-18 00:53:33.635][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:53:33.638][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:53:33.641][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-18 00:53:33.645][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-18 00:53:33.648][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-18 00:53:33.663][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-18 00:53:33.666][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-18 00:53:33.669][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-18 00:53:33.671][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-18 00:53:33.684][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-18 00:53:33.688][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-18 00:53:33.690][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-18 00:53:33.693][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-18 00:53:33.697][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-18 00:53:33.699][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-18 00:53:33.701][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-18 00:53:33.703][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-18 00:53:33.705][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-18 00:53:33.714][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-18 00:53:33.716][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-18 00:53:33.718][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.723][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:33.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:33.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:33.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:33.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:33.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:33.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:33.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:34.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:34.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-18 00:53:34.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:34.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:34.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:34.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:34.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:34.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:34.031][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-18 00:53:34.033][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-18 00:53:34.037][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:34.039][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-18 00:53:34.041][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:34.049][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-18 00:53:34.051][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:34.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-18 00:53:34.055][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:34.058][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-18 00:53:34.060][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-18 00:53:34.063][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-18 00:53:34.065][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:34.067][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-18 00:53:34.078][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-18 00:53:34.080][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-18 00:53:34.085][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-18 00:53:34.088][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-18 00:53:34.088][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-18 00:53:34.088][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-18 00:53:34.090][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-18 00:53:34.092][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:34.094][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:34.130][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-18 00:53:34.133][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-18 00:53:34.135][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-18 00:53:34.137][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-18 00:53:34.143][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-18 00:53:34.143][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-18 00:53:34.146][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-18 00:53:34.148][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-18 00:53:34.150][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-18 00:53:34.152][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-18 00:53:34.152][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-18 00:53:34.159][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-18 00:53:34.162][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-18 00:53:34.166][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-18 00:53:34.184][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-18 00:53:34.189][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-18 00:53:34.196][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-18 00:53:34.204][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-18 00:53:34.210][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-18 00:53:34.213][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-18 00:53:34.216][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-18 00:53:34.225][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:53:34.228][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-18 00:53:34.230][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-18 00:53:34.231][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-18 00:53:34.233][biodb::testThat]
biodb.INFO [2025-03-18 00:53:34.234][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-03-18 00:53:34.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-18 00:53:34.237][biodb::testThat]
biodb.DEBUG[2025-03-18 00:53:34.245][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-18 00:53:34.254][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:34.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-18 00:53:34.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:34.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-18 00:53:34.276][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-18 00:53:34.286][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-18 00:53:34.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-03-18 00:53:34.300][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-18 00:53:34.303][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2025-03-18 00:53:34.317][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-03-18 00:53:34.320][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-18 00:53:34.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2025-03-18 00:53:34.326][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-18 00:53:34.328][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-18 00:53:34.331][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-18 00:53:34.333][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-18 00:53:34.335][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-18 00:53:34.339][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-18 00:53:34.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:34.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:34.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:34.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:34.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:34.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:34.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-18 00:53:34.374][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2025-03-18 00:53:34.383][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-18 00:53:34.386][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-18 00:53:34.389][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2025-03-18 00:53:36.791][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2025-03-18 00:53:37.510][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-18 00:53:37.514][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2025-03-18 00:53:37.524][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2025-03-18 00:53:37.531][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2025-03-18 00:53:37.537][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-18 00:53:37.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-18 00:53:37.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-18 00:53:37.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-18 00:53:37.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:37.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:37.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:37.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:37.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:37.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-18 00:53:37.591][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:37.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:37.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.611][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:37.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:37.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-18 00:53:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-18 00:53:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.632][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:37.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:37.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-18 00:53:37.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-18 00:53:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-18 00:53:37.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-18 00:53:37.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-18 00:53:37.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-18 00:53:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.728][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:37.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:37.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-18 00:53:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.773][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:37.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:37.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-18 00:53:37.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-18 00:53:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:37.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:37.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.834][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-18 00:53:37.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.869][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:37.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:37.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-18 00:53:37.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-18 00:53:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.915][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:37.918][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:37.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-18 00:53:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-18 00:53:37.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:37.960][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:37.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-18 00:53:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-18 00:53:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:37.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:38.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:38.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-18 00:53:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-18 00:53:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:38.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:38.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:38.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-18 00:53:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-18 00:53:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-18 00:53:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-18 00:53:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-18 00:53:38.231][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-03-18 00:53:38.251][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-18 00:53:38.254][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-18 00:53:38.257][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-18 00:53:38.259][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-18 00:53:38.277][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-18 00:53:38.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-18 00:53:38.284][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-18 00:53:38.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-18 00:53:38.302][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-18 00:53:38.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 361 ]
>
> proc.time()
user system elapsed
34.095 1.961 83.634
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 4.929 | 1.289 | 18.861 | |
| ChebiEntry | 0.820 | 0.027 | 1.662 | |