Multiple platform build/check report for BioC 3.20 - CHECK results for biodbHmdb on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4746
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4494
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4517
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4469
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4395
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on merida1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz

StartedAt: 2025-01-24 00:26:17 -0500 (Fri, 24 Jan 2025)

EndedAt: 2025-01-24 00:28:01 -0500 (Fri, 24 Jan 2025)

EllapsedTime: 104.0 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-01-24 00:27:23.335][biodb::testContext]
biodb.INFO [2025-01-24 00:27:23.342][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:23.345][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-01-24 00:27:23.347][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:23.349][biodb::testContext]
biodb.INFO [2025-01-24 00:27:23.353][biodb::testThat]
biodb.INFO [2025-01-24 00:27:23.355][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-01-24 00:27:23.358][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:23.360][biodb::testThat]
biodb.INFO [2025-01-24 00:27:23.602][biodb::testContext]
biodb.INFO [2025-01-24 00:27:23.604][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:23.607][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-01-24 00:27:23.609][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:23.612][biodb::testContext]
biodb.INFO [2025-01-24 00:27:23.631][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-24 00:27:23.635][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-24 00:27:23.651][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:23.654][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-24 00:27:23.657][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-24 00:27:23.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.667][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-24 00:27:23.727][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-24 00:27:23.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.736][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-24 00:27:23.738][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-24 00:27:23.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.746][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-24 00:27:23.748][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-24 00:27:23.750][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-24 00:27:23.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.758][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-24 00:27:23.761][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-24 00:27:23.763][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-24 00:27:23.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.772][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-24 00:27:23.774][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-24 00:27:23.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.783][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-24 00:27:23.785][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-24 00:27:23.787][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-24 00:27:23.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.796][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-24 00:27:23.798][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-24 00:27:23.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.806][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-24 00:27:23.808][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-24 00:27:23.811][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-24 00:27:23.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.819][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-24 00:27:23.821][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-24 00:27:23.823][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-24 00:27:23.826][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-24 00:27:23.829][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-24 00:27:23.831][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-24 00:27:23.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.839][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-24 00:27:23.841][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-24 00:27:23.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.850][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-24 00:27:23.852][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-24 00:27:23.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.860][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-24 00:27:23.863][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-24 00:27:23.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.871][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-24 00:27:23.873][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-24 00:27:23.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.882][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-24 00:27:23.884][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-24 00:27:23.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.893][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-24 00:27:23.895][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-24 00:27:23.917][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-24 00:27:23.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.926][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-24 00:27:23.928][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-24 00:27:23.930][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-24 00:27:23.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:23.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:23.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:23.944][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-24 00:27:24.036][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.082][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-24 00:27:24.085][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.088][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:24.091][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.093][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.096][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.098][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.101][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-24 00:27:24.104][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:24.107][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.109][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-24 00:27:24.112][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:24.115][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.117][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.119][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:24.119][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-24 00:27:24.119][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-24 00:27:24.119][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-24 00:27:24.119][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-24 00:27:24.122][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:24.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.128][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:24.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.143][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.145][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.148][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:24.149][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:24.152][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.154][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.157][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-24 00:27:24.161][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.163][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-24 00:27:24.166][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.168][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:24.170][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.173][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.175][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.177][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.180][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-24 00:27:24.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:24.184][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.187][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-24 00:27:24.189][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:24.191][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.193][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.195][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:24.195][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-24 00:27:24.195][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-24 00:27:24.195][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-24 00:27:24.195][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-24 00:27:24.198][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:24.200][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.202][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.204][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:24.207][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.209][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.211][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.214][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.217][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:24.219][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:24.221][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.224][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.226][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-24 00:27:24.230][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.233][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-24 00:27:24.235][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.238][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:24.240][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.242][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.244][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.247][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.249][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-24 00:27:24.251][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:24.254][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.256][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-24 00:27:24.258][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:24.261][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.263][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.266][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.268][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:24.270][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.272][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.274][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:24.276][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.281][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.283][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.285][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:24.287][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:24.290][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.292][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.295][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-24 00:27:24.300][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.302][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-24 00:27:24.305][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.307][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:24.309][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.311][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.313][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.316][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.318][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-24 00:27:24.320][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:24.323][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.325][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-24 00:27:24.327][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:24.329][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.332][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:24.334][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.336][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:24.338][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.343][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:24.345][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:24.347][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:24.349][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:24.351][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:24.355][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:24.358][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:24.360][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:24.368][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:24.370][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.560][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-24 00:27:24.569][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-24 00:27:24.573][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-24 00:27:24.577][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-24 00:27:24.580][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-24 00:27:24.584][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-24 00:27:24.587][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-24 00:27:24.589][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-24 00:27:24.592][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-24 00:27:24.595][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-24 00:27:24.598][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-24 00:27:24.601][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-24 00:27:24.604][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-24 00:27:24.607][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-24 00:27:24.610][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-24 00:27:24.613][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-24 00:27:24.616][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-24 00:27:24.620][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-24 00:27:24.624][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-24 00:27:24.628][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-24 00:27:24.631][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-24 00:27:24.636][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-24 00:27:24.639][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-24 00:27:24.643][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-24 00:27:24.646][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-24 00:27:24.650][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-24 00:27:24.653][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-24 00:27:24.657][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-24 00:27:24.660][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-24 00:27:24.663][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-24 00:27:24.668][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-24 00:27:24.671][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-24 00:27:24.675][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-24 00:27:24.678][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-24 00:27:24.682][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-24 00:27:24.685][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-24 00:27:24.688][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-24 00:27:24.692][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-24 00:27:24.695][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-24 00:27:24.699][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-24 00:27:24.702][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-24 00:27:24.705][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-24 00:27:24.709][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-24 00:27:24.713][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-24 00:27:24.716][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-24 00:27:24.720][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-24 00:27:24.724][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-24 00:27:24.731][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-24 00:27:24.737][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-24 00:27:24.742][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-24 00:27:24.747][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-24 00:27:24.751][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-24 00:27:24.754][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-24 00:27:24.758][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-24 00:27:24.762][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-24 00:27:24.765][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-24 00:27:24.769][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-24 00:27:24.802][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-24 00:27:24.805][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-24 00:27:24.808][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-24 00:27:24.812][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-24 00:27:24.815][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-24 00:27:24.819][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-24 00:27:24.822][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-24 00:27:24.826][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-24 00:27:24.829][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-24 00:27:24.833][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-24 00:27:24.836][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-24 00:27:24.840][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-24 00:27:24.844][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-24 00:27:24.847][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-24 00:27:24.851][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-24 00:27:24.854][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-24 00:27:24.858][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-24 00:27:24.861][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-24 00:27:24.864][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-24 00:27:24.869][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-24 00:27:24.872][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-24 00:27:24.876][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-24 00:27:24.880][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-24 00:27:24.884][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-24 00:27:24.889][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-24 00:27:24.892][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-24 00:27:24.906][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-24 00:27:24.910][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-24 00:27:24.916][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:24.919][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.923][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:24.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:24.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:24.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:24.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:24.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:24.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:24.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:24.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:24.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:24.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:24.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:24.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:24.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:25.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:25.259][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-24 00:27:25.286][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:25.291][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:25.297][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-24 00:27:25.300][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:25.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:25.306][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:25.308][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-24 00:27:25.311][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:25.314][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:25.316][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-24 00:27:25.319][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:25.321][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:25.324][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-24 00:27:25.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-24 00:27:25.329][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-24 00:27:25.332][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:25.335][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:25.335][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-24 00:27:25.335][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-24 00:27:25.337][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-24 00:27:25.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:25.344][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:25.347][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:25.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:25.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:25.357][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:25.359][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-24 00:27:25.359][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-24 00:27:25.362][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:25.364][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:25.369][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:25.372][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:25.387][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-24 00:27:25.391][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-24 00:27:25.396][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-24 00:27:25.400][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-24 00:27:25.404][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-24 00:27:25.450][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:25.453][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-24 00:27:25.461][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:25.469][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:25.478][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:25.481][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:25.484][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-24 00:27:25.487][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-24 00:27:25.489][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-24 00:27:25.489][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-24 00:27:25.492][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:25.494][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:25.496][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-24 00:27:25.498][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-24 00:27:25.500][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:25.556][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:25.560][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:25.562][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:25.565][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:25.568][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:25.570][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-24 00:27:25.586][biodb::testThat]
biodb.INFO [2025-01-24 00:27:25.588][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-24 00:27:25.590][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:25.593][biodb::testThat]
biodb.TRACE[2025-01-24 00:27:25.600][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-01-24 00:27:25.605][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-24 00:27:25.612][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-24 00:27:25.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:25.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:25.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:25.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:25.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:25.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:25.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:25.671][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:25.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:25.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:25.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:25.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.724][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:25.727][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:25.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.731][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.806][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:25.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.817][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:25.820][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:25.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:25.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:25.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.840][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:25.843][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:25.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.848][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:25.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:25.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:25.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.871][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.885][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:25.888][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:25.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:25.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:25.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.913][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:25.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:25.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.952][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:25.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.970][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:25.973][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:25.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.978][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:25.998][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.001][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.007][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.022][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:26.024][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:26.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:26.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.046][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:26.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:26.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.055][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:26.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.084][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.115][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:26.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:26.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.141][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:26.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.157][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:26.161][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:26.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.168][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:26.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:26.190][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:26.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.196][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:26.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.212][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:26.215][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.219][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:26.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:26.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:26.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:26.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:26.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:26.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:26.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.481][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:26.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:26.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:26.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:26.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:26.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:26.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:26.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:26.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.656][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:26.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:26.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:26.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:26.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:26.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:26.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:26.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:26.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:26.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:26.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:26.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:26.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:26.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.915][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:26.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.937][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:26.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:26.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:26.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:27.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.017][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:27.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:27.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.158][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:27.240][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-24 00:27:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-24 00:27:27.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-24 00:27:27.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-24 00:27:27.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-24 00:27:27.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-24 00:27:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-24 00:27:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-24 00:27:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-24 00:27:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.453][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.586][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:27.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.657][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.660][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.667][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.726][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.729][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.734][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.900][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.921][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:27.992][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:27.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:27.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:27.999][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:28.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.039][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:28.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:28.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.059][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:28.062][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:28.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.066][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.069][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:28.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:28.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:28.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.125][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:28.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:28.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.132][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:28.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.181][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.191][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.194][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.266][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:28.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.325][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.336][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.340][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:28.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.403][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.405][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.467][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.471][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.474][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:28.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:28.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:28.537][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:28.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:28.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:28.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:28.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:28.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:28.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.615][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:28.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:28.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:28.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.808][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.818][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.821][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:28.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:28.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.866][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.877][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.880][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:28.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.895][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.898][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:28.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.902][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:28.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:28.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.920][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.931][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:28.933][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:28.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.952][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:28.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.975][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.978][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:28.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:28.982][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:28.998][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:29.001][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:29.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.018][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:29.021][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:29.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.040][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:29.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:29.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.048][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:29.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:29.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.071][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:29.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:29.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:29.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:29.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.114][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:29.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:29.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.173][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:29.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:29.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.183][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:29.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:29.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.208][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.222][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:29.224][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:29.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.244][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:29.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:29.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.252][ef$get] fields variable is a list.
biodb.INFO [2025-01-24 00:27:29.270][biodb::testThat]
biodb.INFO [2025-01-24 00:27:29.272][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-24 00:27:29.274][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:29.277][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:29.315][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-24 00:27:29.330][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-24 00:27:29.340][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:29.343][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-24 00:27:29.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-24 00:27:29.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-24 00:27:29.355][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-24 00:27:29.358][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-24 00:27:29.425][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-24 00:27:29.428][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-24 00:27:29.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:29.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:29.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:29.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:29.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:29.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:29.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:29.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:29.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:29.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.471][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:29.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.484][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:29.487][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:29.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.496][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:29.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.506][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.509][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.514][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.530][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.533][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.538][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.542][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.571][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.585][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.588][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.593][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:29.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:29.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:29.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:29.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:29.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.649][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:29.652][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:29.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.656][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.670][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:29.673][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:29.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:29.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:29.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.700][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:29.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:29.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:29.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:29.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.721][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:29.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:29.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:29.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.742][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:29.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:29.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:29.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:29.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.778][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:29.780][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:29.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.785][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.798][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:29.800][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:29.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.817][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:29.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:29.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:29.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.837][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:29.840][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:29.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.844][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.847][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:29.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:29.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.943][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:29.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:30.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:30.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:30.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:30.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:30.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:30.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:30.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:30.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:30.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:30.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:30.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:30.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:30.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:30.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:30.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:30.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:30.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:30.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.485][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:30.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.513][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:30.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:30.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:30.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:30.585][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-24 00:27:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-24 00:27:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-24 00:27:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-24 00:27:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-24 00:27:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-24 00:27:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-24 00:27:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-24 00:27:30.633][biodb::testThat]
biodb.INFO [2025-01-24 00:27:30.635][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-24 00:27:30.638][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:30.640][biodb::testThat]
biodb.TRACE[2025-01-24 00:27:30.647][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.653][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:30.656][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-01-24 00:27:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:30.758][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-01-24 00:27:30.762][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-24 00:27:30.764][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-24 00:27:30.766][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-24 00:27:30.770][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:30.773][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:30.777][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:30.780][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:30.782][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:30.784][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:30.786][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:30.789][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:30.791][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:30.793][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-24 00:27:30.795][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-24 00:27:30.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:30.835][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:30.838][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-24 00:27:30.840][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-24 00:27:30.869][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:30.871][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:30.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.876][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:30.879][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-01-24 00:27:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:30.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.927][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:30.953][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-01-24 00:27:31.130][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-24 00:27:31.133][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-24 00:27:31.135][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-24 00:27:31.176][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.179][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.182][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:31.186][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.188][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:31.255][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:31.261][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:31.265][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:31.267][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:31.270][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-24 00:27:31.272][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-24 00:27:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:31.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:31.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.297][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:31.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:31.316][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:31.326][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-24 00:27:31.329][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-24 00:27:31.367][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.371][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.379][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:31.382][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-01-24 00:27:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.437][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:31.479][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-01-24 00:27:31.489][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-01-24 00:27:31.492][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-24 00:27:31.495][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-24 00:27:31.501][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.505][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.508][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:31.513][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.515][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:31.518][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:31.521][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:31.534][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:31.537][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:31.540][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-24 00:27:31.548][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-24 00:27:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.601][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:31.613][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:31.619][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-24 00:27:31.621][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-01-24 00:27:31.680][biodb::testThat]
biodb.INFO [2025-01-24 00:27:31.683][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-24 00:27:31.687][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:31.691][biodb::testThat]
biodb.TRACE[2025-01-24 00:27:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:31.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:31.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:31.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:31.826][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-24 00:27:31.829][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-24 00:27:31.832][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-24 00:27:31.839][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.844][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.851][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:31.856][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:31.859][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:31.864][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:31.866][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:31.870][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:31.872][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:31.881][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-24 00:27:31.883][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-24 00:27:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:31.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:31.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:31.943][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:31.948][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-01-24 00:27:32.002][biodb::testThat]
biodb.INFO [2025-01-24 00:27:32.027][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-24 00:27:32.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:32.032][biodb::testThat]
biodb.TRACE[2025-01-24 00:27:32.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-24 00:27:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-24 00:27:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-24 00:27:32.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-24 00:27:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-24 00:27:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-24 00:27:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-24 00:27:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-24 00:27:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-24 00:27:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-24 00:27:32.376][biodb::testThat]
biodb.INFO [2025-01-24 00:27:32.378][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-24 00:27:32.381][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:32.383][biodb::testThat]
biodb.INFO [2025-01-24 00:27:32.402][biodb::testThat]
biodb.INFO [2025-01-24 00:27:32.404][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-24 00:27:32.407][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:32.411][biodb::testThat]
biodb.INFO [2025-01-24 00:27:32.429][biodb::testThat]
biodb.INFO [2025-01-24 00:27:32.432][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-24 00:27:32.434][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:32.436][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:32.444][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-01-24 00:27:41.890][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-01-24 00:27:41.990][biodb::testThat]
biodb.INFO [2025-01-24 00:27:41.992][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-24 00:27:41.994][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:41.996][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:42.725][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-01-24 00:27:42.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:42.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:42.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:42.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:42.842][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:42.845][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:42.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:42.849][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:42.851][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:42.854][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:42.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:42.858][ef$get] fields variable is a list.
biodb.INFO [2025-01-24 00:27:42.861][biodb::testThat]
biodb.INFO [2025-01-24 00:27:42.863][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-01-24 00:27:42.866][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:42.868][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:42.871][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-01-24 00:27:43.009][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-24 00:27:43.013][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.016][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-24 00:27:43.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-01-24 00:27:43.062][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-24 00:27:43.065][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-24 00:27:43.068][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-24 00:27:43.071][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.073][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-24 00:27:43.076][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-24 00:27:43.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:43.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:43.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:43.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:43.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:43.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:43.105][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:43.215][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-24 00:27:43.217][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-01-24 00:27:43.257][biodb::testThat]
biodb.INFO [2025-01-24 00:27:43.260][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-01-24 00:27:43.262][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:43.264][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:43.284][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-01-24 00:27:43.287][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-01-24 00:27:43.289][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-24 00:27:43.293][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.296][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-24 00:27:43.301][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-01-24 00:27:43.304][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-24 00:27:43.307][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-24 00:27:43.309][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-24 00:27:43.313][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.315][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-24 00:27:43.317][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-24 00:27:43.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:43.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:43.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:43.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:43.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:43.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.357][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:43.418][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-24 00:27:43.420][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-01-24 00:27:43.422][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-01-24 00:27:43.453][biodb::testThat]
biodb.INFO [2025-01-24 00:27:43.456][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-01-24 00:27:43.458][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:43.468][biodb::testThat]
biodb.INFO [2025-01-24 00:27:43.524][biodb::testThat]
biodb.INFO [2025-01-24 00:27:43.526][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-01-24 00:27:43.528][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:43.531][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:43.536][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.539][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.543][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:43.546][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.548][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:43.551][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:43.554][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:43.556][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:43.559][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-01-24 00:27:43.577][biodb::testThat]
biodb.INFO [2025-01-24 00:27:43.579][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-01-24 00:27:43.581][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:43.583][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:43.588][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.591][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.594][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:43.598][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:43.600][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:43.603][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:43.605][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:43.608][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:43.610][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-01-24 00:27:43.710][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:43.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:43.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.719][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:43.722][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:43.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:43.728][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:43.730][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:43.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:43.735][ef$get] fields variable is a list.
biodb.INFO [2025-01-24 00:27:43.738][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-24 00:27:43.740][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-24 00:27:43.761][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-24 00:27:43.763][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-24 00:27:43.766][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:43.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:43.770][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:43.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:43.774][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-24 00:27:43.784][biodb::testContext]
biodb.INFO [2025-01-24 00:27:43.786][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:43.789][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-01-24 00:27:43.791][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:43.793][biodb::testContext]
biodb.INFO [2025-01-24 00:27:43.803][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-24 00:27:43.806][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-24 00:27:43.823][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:43.825][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-24 00:27:43.828][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-24 00:27:43.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.837][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-24 00:27:43.840][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-24 00:27:43.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.849][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-24 00:27:43.851][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-24 00:27:43.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.860][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-24 00:27:43.862][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-24 00:27:43.864][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-24 00:27:43.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.874][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-24 00:27:43.877][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-24 00:27:43.879][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-24 00:27:43.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.888][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-24 00:27:43.891][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-24 00:27:43.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.900][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-24 00:27:43.902][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-24 00:27:43.904][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-24 00:27:43.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.912][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-24 00:27:43.915][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-24 00:27:43.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.923][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-24 00:27:43.926][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-24 00:27:43.928][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-24 00:27:43.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.936][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-24 00:27:43.939][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-24 00:27:43.941][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-24 00:27:43.943][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-24 00:27:43.946][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-24 00:27:43.949][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-24 00:27:43.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.957][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-24 00:27:43.960][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-24 00:27:43.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.969][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-24 00:27:43.972][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-24 00:27:43.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.981][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-24 00:27:43.983][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-24 00:27:43.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:43.991][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-24 00:27:43.993][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-24 00:27:43.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:43.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:43.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.001][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-24 00:27:44.003][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-24 00:27:44.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.011][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-24 00:27:44.013][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-24 00:27:44.032][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-24 00:27:44.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.041][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-24 00:27:44.043][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-24 00:27:44.046][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-24 00:27:44.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.055][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-24 00:27:44.059][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.061][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-24 00:27:44.063][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.066][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:44.068][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.070][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.072][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.074][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.077][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-24 00:27:44.079][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:44.081][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.084][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-24 00:27:44.093][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:44.096][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.099][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.101][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:44.101][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-24 00:27:44.101][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-24 00:27:44.101][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-24 00:27:44.101][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-24 00:27:44.104][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:44.106][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.108][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.111][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:44.113][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.115][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.117][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.119][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:44.124][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:44.127][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.129][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.132][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-24 00:27:44.136][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.138][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-24 00:27:44.140][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.143][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:44.145][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.147][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.149][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.152][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.154][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-24 00:27:44.156][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:44.159][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.161][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-24 00:27:44.164][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:44.166][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.169][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.171][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:44.171][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-24 00:27:44.171][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-24 00:27:44.171][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-24 00:27:44.171][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-24 00:27:44.174][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:44.176][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.178][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.180][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:44.182][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.184][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.186][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.189][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.190][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:44.192][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:44.194][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.197][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.199][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-24 00:27:44.204][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.206][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-24 00:27:44.208][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.210][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:44.212][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.215][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.217][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.220][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.222][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-24 00:27:44.224][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:44.227][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.229][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-24 00:27:44.231][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:44.234][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.236][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.238][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.240][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:44.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.244][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.247][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:44.249][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.251][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.253][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.255][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.258][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:44.260][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:44.262][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.264][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.267][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-24 00:27:44.271][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.273][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-24 00:27:44.275][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.277][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:44.279][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.280][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.282][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.284][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.286][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-24 00:27:44.288][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:44.290][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.292][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-24 00:27:44.295][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:44.297][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.299][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:44.302][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.304][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:44.306][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.308][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.311][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:44.313][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:44.315][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:44.317][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:44.319][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.322][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:44.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:44.326][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:44.329][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:44.332][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:44.341][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.513][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-24 00:27:44.516][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-24 00:27:44.519][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-24 00:27:44.523][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-24 00:27:44.527][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-24 00:27:44.530][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-24 00:27:44.534][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-24 00:27:44.537][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-24 00:27:44.540][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-24 00:27:44.544][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-24 00:27:44.547][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-24 00:27:44.550][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-24 00:27:44.553][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-24 00:27:44.556][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-24 00:27:44.560][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-24 00:27:44.563][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-24 00:27:44.566][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-24 00:27:44.569][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-24 00:27:44.580][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-24 00:27:44.584][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-24 00:27:44.588][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-24 00:27:44.591][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-24 00:27:44.595][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-24 00:27:44.597][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-24 00:27:44.600][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-24 00:27:44.603][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-24 00:27:44.606][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-24 00:27:44.608][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-24 00:27:44.611][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-24 00:27:44.614][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-24 00:27:44.617][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-24 00:27:44.620][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-24 00:27:44.623][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-24 00:27:44.627][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-24 00:27:44.630][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-24 00:27:44.634][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-24 00:27:44.637][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-24 00:27:44.641][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-24 00:27:44.644][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-24 00:27:44.648][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-24 00:27:44.652][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-24 00:27:44.656][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-24 00:27:44.659][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-24 00:27:44.663][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-24 00:27:44.667][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-24 00:27:44.670][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-24 00:27:44.674][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-24 00:27:44.678][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-24 00:27:44.681][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-24 00:27:44.685][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-24 00:27:44.688][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-24 00:27:44.691][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-24 00:27:44.695][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-24 00:27:44.698][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-24 00:27:44.702][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-24 00:27:44.705][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-24 00:27:44.709][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-24 00:27:44.712][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-24 00:27:44.716][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-24 00:27:44.720][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-24 00:27:44.723][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-24 00:27:44.727][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-24 00:27:44.731][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-24 00:27:44.734][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-24 00:27:44.738][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-24 00:27:44.742][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-24 00:27:44.746][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-24 00:27:44.749][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-24 00:27:44.753][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-24 00:27:44.756][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-24 00:27:44.760][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-24 00:27:44.764][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-24 00:27:44.767][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-24 00:27:44.771][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-24 00:27:44.774][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-24 00:27:44.778][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-24 00:27:44.781][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-24 00:27:44.785][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-24 00:27:44.788][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-24 00:27:44.791][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-24 00:27:44.794][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-24 00:27:44.797][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-24 00:27:44.800][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-24 00:27:44.803][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-24 00:27:44.806][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-24 00:27:44.809][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:44.810][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.814][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:44.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:44.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:44.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:44.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:44.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:44.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:44.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:45.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:45.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:45.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:45.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:45.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:45.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:45.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:45.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:45.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:45.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:45.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:45.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:45.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:45.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:45.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:45.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:45.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:45.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:45.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:45.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:45.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:45.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:45.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:45.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:45.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:45.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:45.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:45.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:45.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:45.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:45.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:45.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:45.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:45.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:45.087][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-24 00:27:45.090][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:45.095][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:45.098][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-24 00:27:45.100][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:45.102][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:45.104][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:45.106][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-24 00:27:45.108][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:45.111][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:45.113][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-24 00:27:45.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:45.119][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:45.121][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-24 00:27:45.124][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-24 00:27:45.126][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-24 00:27:45.130][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:45.132][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:45.132][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-24 00:27:45.132][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-24 00:27:45.135][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-24 00:27:45.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:45.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:45.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:45.144][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:45.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:45.149][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:45.151][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-24 00:27:45.151][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-24 00:27:45.154][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:45.156][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:45.158][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:45.161][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:45.164][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-24 00:27:45.168][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-24 00:27:45.172][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-24 00:27:45.176][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-24 00:27:45.180][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-24 00:27:45.187][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:45.190][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-24 00:27:45.193][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:45.197][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:45.200][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:45.202][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:45.206][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-24 00:27:45.208][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-24 00:27:45.210][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-24 00:27:45.210][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-24 00:27:45.213][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:45.215][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:45.217][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-24 00:27:45.219][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-24 00:27:45.221][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:45.225][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:45.228][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:45.230][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:45.234][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:45.237][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:45.239][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-24 00:27:45.243][biodb::testThat]
biodb.INFO [2025-01-24 00:27:45.245][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-01-24 00:27:45.247][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:45.250][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:45.259][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:45.262][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:45.266][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:45.269][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:45.272][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:45.275][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:45.278][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:45.280][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:45.283][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:45.290][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-01-24 00:27:45.304][biodb::testThat]
biodb.INFO [2025-01-24 00:27:45.306][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-01-24 00:27:45.309][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:45.311][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:45.314][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-24 00:27:45.316][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-24 00:27:45.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:45.324][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-24 00:27:45.328][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-24 00:27:45.332][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-24 00:27:45.335][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-24 00:27:45.338][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-24 00:27:45.341][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-24 00:27:45.344][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-24 00:27:45.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:45.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:45.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:45.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:45.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:45.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:45.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:45.383][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:45.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:45.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:45.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.405][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:45.408][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:45.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.413][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.427][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.429][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.446][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.448][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.453][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.471][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.483][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.486][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:45.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:45.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:45.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:45.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.530][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.542][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.545][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.562][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.565][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:45.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:45.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.589][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:45.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:45.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:45.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:45.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:45.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:45.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:45.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:45.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:45.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.656][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:45.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.668][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:45.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:45.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.687][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:45.689][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:45.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:45.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:45.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.713][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.726][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:45.728][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.735][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:45.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:45.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:45.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:46.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:46.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:46.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:46.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:46.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:46.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:46.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.241][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:46.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.250][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:46.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:46.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:46.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:46.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:46.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:46.498][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-24 00:27:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:46.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-24 00:27:46.541][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-24 00:27:46.544][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-24 00:27:46.547][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-24 00:27:46.549][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-24 00:27:46.552][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:46.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:46.556][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:46.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:46.560][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-24 00:27:46.570][biodb::testContext]
biodb.INFO [2025-01-24 00:27:46.572][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:46.574][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-01-24 00:27:46.577][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-24 00:27:46.579][biodb::testContext]
biodb.INFO [2025-01-24 00:27:46.588][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-24 00:27:46.592][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-24 00:27:46.600][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:46.602][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-24 00:27:46.605][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-24 00:27:46.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.613][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-24 00:27:46.616][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-24 00:27:46.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.624][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-24 00:27:46.627][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-24 00:27:46.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.637][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-24 00:27:46.639][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-24 00:27:46.641][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-24 00:27:46.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.649][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-24 00:27:46.652][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-24 00:27:46.654][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-24 00:27:46.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.671][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-24 00:27:46.674][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-24 00:27:46.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.703][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-24 00:27:46.706][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-24 00:27:46.709][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-24 00:27:46.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.718][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-24 00:27:46.720][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-24 00:27:46.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.729][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-24 00:27:46.731][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-24 00:27:46.733][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-24 00:27:46.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.742][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-24 00:27:46.744][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-24 00:27:46.746][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-24 00:27:46.749][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-24 00:27:46.751][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-24 00:27:46.753][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-24 00:27:46.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.762][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-24 00:27:46.764][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-24 00:27:46.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.773][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-24 00:27:46.775][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-24 00:27:46.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.784][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-24 00:27:46.786][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-24 00:27:46.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.798][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-24 00:27:46.800][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-24 00:27:46.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.810][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-24 00:27:46.813][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-24 00:27:46.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.821][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-24 00:27:46.826][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-24 00:27:46.849][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-24 00:27:46.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.857][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-24 00:27:46.859][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-24 00:27:46.862][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-24 00:27:46.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:46.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:46.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:46.871][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-24 00:27:46.875][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:46.878][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-24 00:27:46.880][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.883][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:46.885][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.887][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:46.890][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:46.893][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:46.895][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-24 00:27:46.898][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:46.901][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.903][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-24 00:27:46.906][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:46.908][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:46.911][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.913][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:46.913][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-24 00:27:46.913][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-24 00:27:46.913][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-24 00:27:46.913][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-24 00:27:46.916][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:46.918][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:46.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:46.923][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:46.925][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:46.927][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:46.930][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:46.932][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:46.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:46.937][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:46.939][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:46.942][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:46.945][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-24 00:27:46.949][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:46.952][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-24 00:27:46.955][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.957][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:46.969][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.972][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:46.975][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:46.978][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:46.980][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-24 00:27:46.983][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:46.985][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.988][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-24 00:27:46.990][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:46.993][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:46.995][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:46.998][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:46.998][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-24 00:27:46.998][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-24 00:27:46.998][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-24 00:27:46.998][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-24 00:27:47.000][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:47.003][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:47.005][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:47.007][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:47.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:47.012][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:47.015][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:47.018][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.020][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:47.023][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:47.025][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:47.028][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.031][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-24 00:27:47.036][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.038][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-24 00:27:47.041][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.043][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:47.047][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.049][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:47.052][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:47.055][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:47.058][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-24 00:27:47.060][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:47.063][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:47.065][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-24 00:27:47.067][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:47.070][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.072][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.074][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.077][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:47.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:47.082][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:47.084][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:47.087][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:47.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:47.091][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:47.094][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.096][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:47.098][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:47.100][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:47.103][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.105][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-24 00:27:47.110][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.112][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-24 00:27:47.114][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.117][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:47.119][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.122][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-24 00:27:47.124][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:47.127][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:47.129][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-24 00:27:47.132][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:47.134][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:47.137][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-24 00:27:47.139][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:47.142][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.144][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:47.146][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.149][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-24 00:27:47.151][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:47.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:47.155][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:47.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:47.160][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:47.162][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:47.164][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.166][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:47.168][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:47.171][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:47.173][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:47.176][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:47.178][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.482][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-24 00:27:47.486][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-24 00:27:47.489][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-24 00:27:47.493][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-24 00:27:47.496][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-24 00:27:47.500][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-24 00:27:47.503][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-24 00:27:47.507][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-24 00:27:47.511][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-24 00:27:47.514][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-24 00:27:47.518][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-24 00:27:47.522][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-24 00:27:47.525][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-24 00:27:47.529][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-24 00:27:47.533][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-24 00:27:47.537][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-24 00:27:47.540][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-24 00:27:47.544][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-24 00:27:47.548][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-24 00:27:47.552][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-24 00:27:47.555][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-24 00:27:47.559][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-24 00:27:47.563][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-24 00:27:47.567][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-24 00:27:47.570][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-24 00:27:47.574][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-24 00:27:47.577][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-24 00:27:47.581][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-24 00:27:47.594][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-24 00:27:47.597][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-24 00:27:47.601][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-24 00:27:47.605][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-24 00:27:47.608][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-24 00:27:47.611][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-24 00:27:47.615][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-24 00:27:47.619][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-24 00:27:47.622][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-24 00:27:47.626][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-24 00:27:47.629][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-24 00:27:47.633][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-24 00:27:47.636][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-24 00:27:47.639][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-24 00:27:47.643][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-24 00:27:47.647][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-24 00:27:47.650][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-24 00:27:47.654][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-24 00:27:47.657][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-24 00:27:47.661][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-24 00:27:47.665][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-24 00:27:47.668][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-24 00:27:47.672][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-24 00:27:47.676][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-24 00:27:47.680][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-24 00:27:47.684][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-24 00:27:47.687][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-24 00:27:47.691][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-24 00:27:47.695][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-24 00:27:47.699][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-24 00:27:47.703][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-24 00:27:47.706][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-24 00:27:47.710][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-24 00:27:47.714][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-24 00:27:47.717][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-24 00:27:47.721][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-24 00:27:47.725][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-24 00:27:47.729][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-24 00:27:47.733][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-24 00:27:47.736][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-24 00:27:47.740][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-24 00:27:47.744][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-24 00:27:47.748][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-24 00:27:47.752][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-24 00:27:47.756][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-24 00:27:47.761][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-24 00:27:47.765][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-24 00:27:47.769][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-24 00:27:47.773][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-24 00:27:47.778][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-24 00:27:47.784][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-24 00:27:47.789][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-24 00:27:47.793][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-24 00:27:47.798][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-24 00:27:47.802][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-24 00:27:47.806][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-24 00:27:47.810][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-24 00:27:47.813][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-24 00:27:47.815][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.820][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:47.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:47.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:47.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:47.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:47.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:47.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:47.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:48.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:48.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:48.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:48.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:48.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:48.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:48.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:48.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:48.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:48.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:48.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-24 00:27:48.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:48.116][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-24 00:27:48.120][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:48.125][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:48.128][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-24 00:27:48.139][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:48.142][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-24 00:27:48.144][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:48.147][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-24 00:27:48.150][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:48.153][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-24 00:27:48.156][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-24 00:27:48.159][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-24 00:27:48.162][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:48.164][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-24 00:27:48.167][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-24 00:27:48.169][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-24 00:27:48.173][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-24 00:27:48.175][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-24 00:27:48.175][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-24 00:27:48.175][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-24 00:27:48.178][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-24 00:27:48.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:48.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:48.185][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-24 00:27:48.187][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-24 00:27:48.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-24 00:27:48.192][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-24 00:27:48.195][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-24 00:27:48.195][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-24 00:27:48.197][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:48.200][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:48.202][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-24 00:27:48.205][self$setPropertyValue]
biodb.DEBUG[2025-01-24 00:27:48.209][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-24 00:27:48.212][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-24 00:27:48.216][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-24 00:27:48.220][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-24 00:27:48.223][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-24 00:27:48.231][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:48.233][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-24 00:27:48.236][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:48.239][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:48.242][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:48.244][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:48.247][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-24 00:27:48.249][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-24 00:27:48.252][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-24 00:27:48.252][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-24 00:27:48.255][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-24 00:27:48.257][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-24 00:27:48.259][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-24 00:27:48.262][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-24 00:27:48.265][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-24 00:27:48.268][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:48.271][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:48.274][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:48.278][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-24 00:27:48.281][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-24 00:27:48.283][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-24 00:27:48.286][biodb::testThat]
biodb.INFO [2025-01-24 00:27:48.289][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-01-24 00:27:48.291][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-24 00:27:48.293][biodb::testThat]
biodb.DEBUG[2025-01-24 00:27:48.298][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-24 00:27:48.301][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-24 00:27:48.303][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-24 00:27:48.311][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:48.314][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:48.318][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:48.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:48.324][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:48.327][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:48.330][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:48.332][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:48.334][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:48.337][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-24 00:27:48.339][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-01-24 00:27:48.343][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-24 00:27:48.345][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-24 00:27:48.350][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:48.353][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-24 00:27:48.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-24 00:27:48.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-24 00:27:48.366][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-24 00:27:48.368][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-24 00:27:48.372][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-24 00:27:48.374][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-24 00:27:48.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:48.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:48.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:48.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:48.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:48.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:48.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:48.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:48.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:48.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.425][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:48.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.439][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:48.441][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:48.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.461][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.465][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.470][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.485][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.488][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.493][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.512][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.524][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:48.527][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:48.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:48.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:48.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:48.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.552][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.565][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:48.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:48.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.572][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.586][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:48.590][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:48.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.595][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.608][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:48.611][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:48.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.616][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.629][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:48.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:48.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:48.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:48.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.677][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:48.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:48.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.684][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:48.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:48.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:48.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.705][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:48.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:48.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.743][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:48.747][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:48.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:48.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:48.771][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:48.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.790][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:48.793][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:48.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:48.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:48.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.859][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.868][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:48.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:48.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:49.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:49.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:49.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:49.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:49.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:49.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.122][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:49.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:49.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:49.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:49.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:49.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.363][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:49.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:49.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:49.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:49.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.502][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:49.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:49.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:49.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:49.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:49.596][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-24 00:27:49.599][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.608][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:49.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:49.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:49.637][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:49.639][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-24 00:27:49.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:49.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:49.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:49.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:49.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:49.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:49.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:49.665][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-24 00:27:49.667][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-24 00:27:49.671][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:49.674][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-24 00:27:49.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-24 00:27:49.682][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-24 00:27:49.685][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-24 00:27:49.688][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-24 00:27:49.691][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-24 00:27:49.694][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-24 00:27:49.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:49.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:49.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:49.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:49.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:49.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:49.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:49.727][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.734][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.747][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.769][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.782][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.796][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:49.799][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:49.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.803][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.816][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:49.819][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:49.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.826][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:49.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:49.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:49.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:49.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.842][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.855][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:49.857][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:49.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.862][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.909][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.920][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.923][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.941][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.943][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:49.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:49.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.967][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:49.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:49.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.986][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:49.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:49.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.048][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.056][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.069][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.071][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.075][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.087][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:50.089][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:50.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.094][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.107][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:50.110][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.114][ef$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-24 00:27:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.155][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:50.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-24 00:27:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-24 00:27:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.182][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:50.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-24 00:27:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-24 00:27:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-24 00:27:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-24 00:27:50.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:50.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:50.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-24 00:27:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:50.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:50.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-24 00:27:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:50.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:50.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-24 00:27:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-24 00:27:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:50.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:50.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-24 00:27:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-24 00:27:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:50.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-24 00:27:50.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-24 00:27:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.484][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:50.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:50.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:50.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-24 00:27:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-24 00:27:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:50.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:50.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:50.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-24 00:27:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.609][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:50.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-24 00:27:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:50.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:50.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-24 00:27:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-24 00:27:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.701][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-24 00:27:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-24 00:27:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-24 00:27:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-24 00:27:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-24 00:27:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-24 00:27:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-24 00:27:50.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:50.872][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-24 00:27:50.874][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:50.906][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:50.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:50.917][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:50.920][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:50.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:50.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:50.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:50.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:50.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:50.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:50.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:50.960][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-24 00:27:50.963][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-24 00:27:50.965][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-24 00:27:50.970][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:50.974][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:50.977][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:50.982][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:50.984][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:50.986][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:50.988][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:50.991][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:50.993][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:50.995][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-24 00:27:50.997][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-24 00:27:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.018][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.059][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:51.069][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:51.072][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-24 00:27:51.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:51.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:51.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:51.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:51.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:51.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:51.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:51.109][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.119][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.156][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:51.175][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-24 00:27:51.177][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-24 00:27:51.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:51.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:51.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:51.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:51.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:51.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:51.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-24 00:27:51.214][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-24 00:27:51.216][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-24 00:27:51.219][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-24 00:27:51.223][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:51.226][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:51.230][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-24 00:27:51.233][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-24 00:27:51.235][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-24 00:27:51.238][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-24 00:27:51.241][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-24 00:27:51.243][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-24 00:27:51.246][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-24 00:27:51.248][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-24 00:27:51.251][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-24 00:27:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.293][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:51.316][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-24 00:27:51.318][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-01-24 00:27:51.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:51.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:51.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:51.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:51.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:51.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:51.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-24 00:27:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.395][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-24 00:27:51.414][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-24 00:27:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-24 00:27:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-24 00:27:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-24 00:27:51.422][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-24 00:27:51.424][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-24 00:27:51.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-24 00:27:51.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:51.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:51.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:51.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:51.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:51.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-24 00:27:51.464][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-24 00:27:51.467][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-24 00:27:51.469][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-24 00:27:51.471][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-24 00:27:51.473][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-24 00:27:51.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-24 00:27:51.477][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-24 00:27:51.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-24 00:27:51.481][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-24 00:27:51.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 20.583   1.063  33.225

CHECK results for biodbHmdb on merida1

Summary

Command output

Installation output

Tests output

Example timings