Multiple platform build/check report for BioC 3.23 - BUILD results for diffuStats on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4992
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"	4725
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for diffuStats on kjohnson3

To the developers/maintainers of the diffuStats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/diffuStats.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: diffuStats

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data diffuStats

StartedAt: 2026-05-07 15:51:50 -0400 (Thu, 07 May 2026)

EndedAt: 2026-05-07 15:52:09 -0400 (Thu, 07 May 2026)

EllapsedTime: 19.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data diffuStats
###
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* checking for file ‘diffuStats/DESCRIPTION’ ... OK
* preparing ‘diffuStats’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘intro.Rmd’ using rmarkdown
Error: processing vignette 'intro.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘intro.Rmd’

--- re-building ‘diffuStats.Rnw’ using Sweave

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
Kernel not supplied. Computing regularised Laplacian kernel ...
Done
All done
Warning: `induced.subgraph()` was deprecated in igraph 2.0.0.
ℹ Please use `induced_subgraph()` instead.
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
All done
--- finished re-building ‘diffuStats.Rnw’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted