##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings enrichViewNet_1.8.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/enrichViewNet.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘enrichViewNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘enrichViewNet’ version ‘1.8.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enrichViewNet’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   3.     └─gprofiler2::gprofiler_request(url, body)
  ── Error ('test-methodsInternal.R:415:5'): createCXJSONForCytoscape() must return expected text ──
  Error: Request to g:Profiler failed (HTTP 503). The service may be temporarily unavailable.
  If the issue persists, please contact biit.support@ut.ee with a reproducible example.
  Backtrace:
      ▆
   1. └─enrichViewNet:::extractNodesAndEdgesInformation(...) at test-methodsInternal.R:415:5
   2.   └─enrichViewNet:::extractInformationWhenNoIntersection(...)
   3.     └─gprofiler2::gconvert(query = c(listTerm$term_id), organism = gostObject$meta$query_metadata$organism)
   4.       └─gprofiler2::gprofiler_request(url, body)
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 210 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/enrichViewNet.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL enrichViewNet
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘enrichViewNet’ ...
** this is package ‘enrichViewNet’ version ‘1.8.1’
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (enrichViewNet)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(enrichViewNet)

> 
> ## Run all unit tests
> test_check("enrichViewNet")
Saving _problems/test-methodsInternal-364.R
Saving _problems/test-methodsInternal-416.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 210 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-methodsInternal.R:363:5'): extractInformationWhenNoIntersection() must return expected text ──
Error: Request to g:Profiler failed (HTTP 503). The service may be temporarily unavailable.
If the issue persists, please contact biit.support@ut.ee with a reproducible example.
Backtrace:
    ▆
 1. └─enrichViewNet:::extractInformationWhenNoIntersection(...) at test-methodsInternal.R:363:5
 2.   └─gprofiler2::gconvert(query = c(listTerm$term_id), organism = gostObject$meta$query_metadata$organism)
 3.     └─gprofiler2::gprofiler_request(url, body)
── Error ('test-methodsInternal.R:415:5'): createCXJSONForCytoscape() must return expected text ──
Error: Request to g:Profiler failed (HTTP 503). The service may be temporarily unavailable.
If the issue persists, please contact biit.support@ut.ee with a reproducible example.
Backtrace:
    ▆
 1. └─enrichViewNet:::extractNodesAndEdgesInformation(...) at test-methodsInternal.R:415:5
 2.   └─enrichViewNet:::extractInformationWhenNoIntersection(...)
 3.     └─gprofiler2::gconvert(query = c(listTerm$term_id), organism = gostObject$meta$query_metadata$organism)
 4.       └─gprofiler2::gprofiler_request(url, body)

[ FAIL 2 | WARN 0 | SKIP 0 | PASS 210 ]
Error:
! Test failures.
Execution halted