| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-27 12:06 -0500 (Mon, 27 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 865/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gINTomics 1.2.0 (landing page) Angelo Velle
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the gINTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gINTomics |
| Version: 1.2.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL gINTomics |
| StartedAt: 2025-01-23 16:48:26 -0500 (Thu, 23 Jan 2025) |
| EndedAt: 2025-01-23 16:51:30 -0500 (Thu, 23 Jan 2025) |
| EllapsedTime: 184.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL gINTomics ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'gINTomics' ... ** using staged installation ** R [2025-01-23 16:48:46] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:48:46] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:48:46] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:48:46] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-23 16:48:46] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:48:46] [TRACE] [OmnipathR] Contains 1 files. [2025-01-23 16:48:46] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-23 16:48:46] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:48:46] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:48:46] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:48:46] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-23 16:48:46] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-23 16:48:46] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:48:46] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-23 16:48:46] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:48:47] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-23 16:48:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:48:47] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-23 16:48:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:48:47] [TRACE] [OmnipathR] Cache locked: FALSE ** data ** inst ** byte-compile and prepare package for lazy loading [2025-01-23 16:49:52] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:49:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:49:52] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:49:52] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-23 16:49:52] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:49:52] [TRACE] [OmnipathR] Contains 1 files. [2025-01-23 16:49:52] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-23 16:49:52] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:49:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:49:52] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:49:52] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-23 16:49:52] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-23 16:49:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:49:52] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-23 16:49:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:49:52] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-23 16:49:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:49:52] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-23 16:49:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:49:52] [TRACE] [OmnipathR] Cache locked: FALSE ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2025-01-23 16:51:00] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:51:00] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:00] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:51:00] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-23 16:51:00] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:51:00] [TRACE] [OmnipathR] Contains 1 files. [2025-01-23 16:51:00] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-23 16:51:00] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:51:00] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:00] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:51:01] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-23 16:51:01] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-23 16:51:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:01] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-23 16:51:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:01] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-23 16:51:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:01] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-23 16:51:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:01] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2025-01-23 16:51:23] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:51:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:23] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:51:23] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-23 16:51:24] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:51:24] [TRACE] [OmnipathR] Contains 1 files. [2025-01-23 16:51:24] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-23 16:51:24] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 16:51:24] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:24] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 16:51:24] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-23 16:51:24] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-23 16:51:24] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:24] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-23 16:51:24] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:24] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-23 16:51:24] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:24] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-23 16:51:24] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 16:51:24] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (gINTomics)