Britta Velten
| Snapshot Date: 2026-04-28 14:14 -0400 (Tue, 28 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_23 |
| git_last_commit: 7354ec6 |
| git_last_commit_date: 2026-04-28 08:49:19 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-29 10:15 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4694 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 942/2415 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.28.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.28.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.28.0.tar.gz |
| StartedAt: 2026-04-28 21:42:42 -0400 (Tue, 28 Apr 2026) |
| EndedAt: 2026-04-28 21:43:12 -0400 (Tue, 28 Apr 2026) |
| EllapsedTime: 29.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.28.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-29 01:42:43 UTC
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.28.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
* used SDK: ‘MacOSX26.2.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.28.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.6/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.752
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-562.206
ELB improved by 310.546
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.397
ELB improved by 59.8088
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.753
ELB improved by 36.6436
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.78
ELB improved by 14.9729
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.14
ELB improved by 5.6408
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.862
ELB improved by 3.2776
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.478
ELB improved by 2.38437
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.493
ELB improved by 1.98501
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.689
ELB improved by 1.80326
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.964
ELB improved by 1.72534
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.262
ELB improved by 1.70175
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.551
ELB improved by 1.71123
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.807
ELB improved by 1.74382
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.019
ELB improved by 1.78797
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.199
ELB improved by 1.8206
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.393
ELB improved by 1.80531
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.688
ELB improved by 1.70566
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.178
ELB improved by 1.50938
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.935
ELB improved by 1.24345
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.974
ELB improved by 0.96109
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.263
ELB improved by 0.710283
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.75
ELB improved by 0.513883
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.377
ELB improved by 0.372413
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.102
ELB improved by 0.275423
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.892
ELB improved by 0.210079
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.726
ELB improved by 0.165513
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.592
ELB improved by 0.134149
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.481
ELB improved by 0.111297
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.387
ELB improved by 0.0941826
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.305
ELB improved by 0.0811188
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.234
ELB improved by 0.0709944
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.171
ELB improved by 0.0630272
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.115
ELB improved by 0.0566502
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.063
ELB improved by 0.0514516
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.016
ELB improved by 0.0471343
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.973
ELB improved by 0.0434858
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.932
ELB improved by 0.0403545
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.895
ELB improved by 0.0376319
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.859
ELB improved by 0.0352397
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.826
ELB improved by 0.0331205
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.795
ELB improved by 0.0312317
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.766
ELB improved by 0.029541
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.738
ELB improved by 0.0280234
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.711
ELB improved by 0.026659
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.685
ELB improved by 0.0254321
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.661
ELB improved by 0.0243296
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.638
ELB improved by 0.023341
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.615
ELB improved by 0.0224575
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.594
ELB improved by 0.0216717
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.573
ELB improved by 0.0209777
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.552
ELB improved by 0.0203706
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.532
ELB improved by 0.0198465
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.513
ELB improved by 0.0194026
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.494
ELB improved by 0.0190368
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.475
ELB improved by 0.018748
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.457
ELB improved by 0.018536
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.438
ELB improved by 0.0184015
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.42
ELB improved by 0.0183463
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.402
ELB improved by 0.0183729
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.383
ELB improved by 0.0184853
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.364
ELB improved by 0.0186884
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.345
ELB improved by 0.0189889
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.326
ELB improved by 0.0193946
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.306
ELB improved by 0.0199154
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.286
ELB improved by 0.0205629
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.264
ELB improved by 0.0213513
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.242
ELB improved by 0.022297
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.219
ELB improved by 0.0234195
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.194
ELB improved by 0.0247419
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.167
ELB improved by 0.0262908
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.139
ELB improved by 0.0280971
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.109
ELB improved by 0.0301966
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.077
ELB improved by 0.0326305
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.041
ELB improved by 0.0354451
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.002
ELB improved by 0.0386928
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.96
ELB improved by 0.0424304
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.913
ELB improved by 0.0467185
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.862
ELB improved by 0.0516179
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.804
ELB improved by 0.0571841
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.741
ELB improved by 0.0634599
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.671
ELB improved by 0.0704634
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.592
ELB improved by 0.078173
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.506
ELB improved by 0.0865106
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.411
ELB improved by 0.0953242
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.306
ELB improved by 0.104373
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.193
ELB improved by 0.113324
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.071
ELB improved by 0.121758
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.942
ELB improved by 0.129194
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.807
ELB improved by 0.135141
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.668
ELB improved by 0.139155
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.527
ELB improved by 0.140914
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.386
ELB improved by 0.140276
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.249
ELB improved by 0.137321
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.117
ELB improved by 0.132339
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.991
ELB improved by 0.125784
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.873
ELB improved by 0.118197
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.763
ELB improved by 0.11012
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.661
ELB improved by 0.102029
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.566
ELB improved by 0.0942945
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.479
ELB improved by 0.087167
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.398
ELB improved by 0.0807876
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.323
ELB improved by 0.0752071
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.253
ELB improved by 0.070409
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.186
ELB improved by 0.0663317
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.124
ELB improved by 0.0628869
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.064
ELB improved by 0.0599736
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.006
ELB improved by 0.0574895
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.951
ELB improved by 0.0553383
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.897
ELB improved by 0.053436
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.846
ELB improved by 0.051716
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.795
ELB improved by 0.0501337
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.747
ELB improved by 0.0486721
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.699
ELB improved by 0.0473507
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.653
ELB improved by 0.0462395
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.608
ELB improved by 0.0454856
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.562
ELB improved by 0.0453627
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.516
ELB improved by 0.046366
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.467
ELB improved by 0.0493898
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.411
ELB improved by 0.0560453
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.341
ELB improved by 0.0691776
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.248
ELB improved by 0.0935676
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.111
ELB improved by 0.136458
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.906
ELB improved by 0.204977
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.619
ELB improved by 0.287806
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.287
ELB improved by 0.331281
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.981
ELB improved by 0.306054
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.73
ELB improved by 0.25133
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.536
ELB improved by 0.193629
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.394
ELB improved by 0.142206
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.291
ELB improved by 0.103286
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.214
ELB improved by 0.0771069
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.154
ELB improved by 0.0600179
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.105
ELB improved by 0.0481315
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.067
ELB improved by 0.0388396
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.036
ELB improved by 0.0309212
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.012
ELB improved by 0.0240936
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.993
ELB improved by 0.0184459
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.979
ELB improved by 0.0140436
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.968
ELB improved by 0.010798
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.96
ELB improved by 0.00850457
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-881.143
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-587.979
ELB improved by 293.165
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-526.675
ELB improved by 61.3039
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-484.107
ELB improved by 42.5672
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.981
ELB improved by 20.1268
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.236
ELB improved by 8.74457
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.527
ELB improved by 5.70908
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.365
ELB improved by 5.16249
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.1
ELB improved by 5.26442
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.54
ELB improved by 5.56013
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.767
ELB improved by 5.77348
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.168
ELB improved by 5.59877
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.298
ELB improved by 4.86993
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.514
ELB improved by 3.78404
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.804
ELB improved by 2.70966
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.936
ELB improved by 1.86799
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.65
ELB improved by 1.28613
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.746
ELB improved by 0.903968
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.089
ELB improved by 0.657007
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.591
ELB improved by 0.497535
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.199
ELB improved by 0.392616
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.878
ELB improved by 0.320764
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.609
ELB improved by 0.268942
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.38
ELB improved by 0.229619
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.181
ELB improved by 0.198509
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.008
ELB improved by 0.173142
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.856
ELB improved by 0.15206
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.721
ELB improved by 0.134352
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.602
ELB improved by 0.119399
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.495
ELB improved by 0.10673
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.399
ELB improved by 0.0959672
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.313
ELB improved by 0.086796
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.234
ELB improved by 0.0789548
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.161
ELB improved by 0.0722273
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.095
ELB improved by 0.0664344
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.034
ELB improved by 0.0614276
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.976
ELB improved by 0.0570817
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.923
ELB improved by 0.0532898
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.873
ELB improved by 0.0499581
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.826
ELB improved by 0.0470021
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.782
ELB improved by 0.044344
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.74
ELB improved by 0.0419108
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.7
ELB improved by 0.0396348
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.663
ELB improved by 0.0374559
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.628
ELB improved by 0.0353248
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.594
ELB improved by 0.0332079
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.563
ELB improved by 0.0310897
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.534
ELB improved by 0.0289742
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.507
ELB improved by 0.0268816
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.483
ELB improved by 0.0248421
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.46
ELB improved by 0.022889
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.439
ELB improved by 0.0210512
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.419
ELB improved by 0.0193493
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.401
ELB improved by 0.0177938
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.385
ELB improved by 0.0163859
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.37
ELB improved by 0.0151194
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.356
ELB improved by 0.0139839
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.343
ELB improved by 0.0129664
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.331
ELB improved by 0.0120537
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.32
ELB improved by 0.0112329
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.309
ELB improved by 0.0104927
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.299
ELB improved by 0.00982271
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-864.077
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.107
ELB improved by 294.97
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-510.708
ELB improved by 58.3991
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.956
ELB improved by 37.7515
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.085
ELB improved by 16.8715
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.622
ELB improved by 6.46264
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.525
ELB improved by 3.09728
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.496
ELB improved by 2.02846
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.881
ELB improved by 1.61586
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.439
ELB improved by 1.44138
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.068
ELB improved by 1.37076
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.716
ELB improved by 1.3524
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.35
ELB improved by 1.36561
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.949
ELB improved by 1.40124
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.497
ELB improved by 1.4519
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.993
ELB improved by 1.50469
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.455
ELB improved by 1.53716
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.932
ELB improved by 1.52329
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.479
ELB improved by 1.45294
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.132
ELB improved by 1.34677
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.891
ELB improved by 1.24191
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.73
ELB improved by 1.16091
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.627
ELB improved by 1.10297
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.565
ELB improved by 1.06154
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.532
ELB improved by 1.03345
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.518
ELB improved by 1.01417
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.519
ELB improved by 0.998154
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.532
ELB improved by 0.987111
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.546
ELB improved by 0.98577
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.571
ELB improved by 0.975848
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.633
ELB improved by 0.937841
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.734
ELB improved by 0.898526
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.825
ELB improved by 0.909023
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.787
ELB improved by 1.03802
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.476
ELB improved by 1.31159
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.993
ELB improved by 1.48226
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.705
ELB improved by 1.28862
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.699
ELB improved by 1.0057
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.893
ELB improved by 0.806304
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.223
ELB improved by 0.669291
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.657
ELB improved by 0.56682
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.173
ELB improved by 0.483465
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.759
ELB improved by 0.414021
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.396
ELB improved by 0.363193
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.051
ELB improved by 0.344675
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.672
ELB improved by 0.379623
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.196
ELB improved by 0.475321
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.657
ELB improved by 0.539482
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.191
ELB improved by 0.466059
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.839
ELB improved by 0.351906
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.572
ELB improved by 0.267131
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.366
ELB improved by 0.20626
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.2
ELB improved by 0.165224
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.059
ELB improved by 0.141644
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.93
ELB improved by 0.1288
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.812
ELB improved by 0.117785
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.711
ELB improved by 0.101304
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.632
ELB improved by 0.0789748
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.575
ELB improved by 0.0569443
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.535
ELB improved by 0.0401673
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.506
ELB improved by 0.0289924
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.484
ELB improved by 0.0217505
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.467
ELB improved by 0.0169532
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.453
ELB improved by 0.0136835
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.442
ELB improved by 0.0114037
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.432
ELB improved by 0.00978241
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-837.604
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-559.934
ELB improved by 277.67
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-498.37
ELB improved by 61.5642
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.931
ELB improved by 34.4385
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.713
ELB improved by 14.2182
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.015
ELB improved by 6.69854
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.643
ELB improved by 4.37193
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.018
ELB improved by 3.6246
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.551
ELB improved by 3.46667
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.102
ELB improved by 3.44973
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.756
ELB improved by 3.346
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.726
ELB improved by 3.02923
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.242
ELB improved by 2.48442
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.408
ELB improved by 1.83367
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.15
ELB improved by 1.25852
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.292
ELB improved by 0.857768
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.676
ELB improved by 0.616397
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.201
ELB improved by 0.474669
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.817
ELB improved by 0.383661
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.498
ELB improved by 0.319059
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.225
ELB improved by 0.272983
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.982
ELB improved by 0.242895
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.756
ELB improved by 0.226482
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.535
ELB improved by 0.221129
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.31
ELB improved by 0.224503
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.075
ELB improved by 0.234886
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.824
ELB improved by 0.251142
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.552
ELB improved by 0.272493
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.253
ELB improved by 0.298282
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.926
ELB improved by 0.327824
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.565
ELB improved by 0.360406
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.17
ELB improved by 0.395452
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.737
ELB improved by 0.432786
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.264
ELB improved by 0.472632
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.75
ELB improved by 0.51471
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.193
ELB improved by 0.556451
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.6
ELB improved by 0.592794
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.981
ELB improved by 0.619924
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.342
ELB improved by 0.638237
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.692
ELB improved by 0.649788
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.038
ELB improved by 0.654921
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.386
ELB improved by 0.651839
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.748
ELB improved by 0.637681
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.138
ELB improved by 0.609703
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.572
ELB improved by 0.566315
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.064
ELB improved by 0.508093
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.625
ELB improved by 0.438547
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.262
ELB improved by 0.363883
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.97
ELB improved by 0.29133
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.743
ELB improved by 0.22689
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.569
ELB improved by 0.173893
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.436
ELB improved by 0.132925
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.334
ELB improved by 0.102685
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.253
ELB improved by 0.0810369
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.187
ELB improved by 0.0657837
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.132
ELB improved by 0.0550566
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.084
ELB improved by 0.0474226
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.043
ELB improved by 0.0418491
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.005
ELB improved by 0.0376235
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.971
ELB improved by 0.0342729
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.939
ELB improved by 0.0315
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.91
ELB improved by 0.0291332
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.883
ELB improved by 0.0270856
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.858
ELB improved by 0.0253222
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.834
ELB improved by 0.0238333
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.811
ELB improved by 0.0226162
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.79
ELB improved by 0.0216659
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.769
ELB improved by 0.0209722
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.748
ELB improved by 0.0205209
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.728
ELB improved by 0.0202968
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.708
ELB improved by 0.0202866
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.687
ELB improved by 0.0204816
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.666
ELB improved by 0.0208795
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.645
ELB improved by 0.0214863
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.622
ELB improved by 0.0223178
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.599
ELB improved by 0.0234031
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.574
ELB improved by 0.0247876
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.548
ELB improved by 0.0265395
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.519
ELB improved by 0.0287582
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.487
ELB improved by 0.0315865
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.452
ELB improved by 0.0352272
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.412
ELB improved by 0.0399589
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.366
ELB improved by 0.0461415
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.312
ELB improved by 0.0541776
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.247
ELB improved by 0.064375
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.171
ELB improved by 0.076667
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.08
ELB improved by 0.0903309
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.976
ELB improved by 0.104205
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.858
ELB improved by 0.117779
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.726
ELB improved by 0.132067
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.578
ELB improved by 0.148163
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.415
ELB improved by 0.163658
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.243
ELB improved by 0.171709
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.075
ELB improved by 0.16778
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.919
ELB improved by 0.155696
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.777
ELB improved by 0.142148
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.647
ELB improved by 0.130257
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.527
ELB improved by 0.120191
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.415
ELB improved by 0.111401
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.312
ELB improved by 0.103458
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.216
ELB improved by 0.0961188
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.127
ELB improved by 0.0892436
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.044
ELB improved by 0.0827453
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.967
ELB improved by 0.0765703
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.897
ELB improved by 0.0706918
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.831
ELB improved by 0.0651057
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.772
ELB improved by 0.0598254
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.717
ELB improved by 0.0548746
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.666
ELB improved by 0.0502813
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.62
ELB improved by 0.0460712
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.578
ELB improved by 0.0422644
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.539
ELB improved by 0.0388715
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.503
ELB improved by 0.0358933
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.47
ELB improved by 0.0333201
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.439
ELB improved by 0.0311329
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.41
ELB improved by 0.0293053
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.382
ELB improved by 0.0278055
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.355
ELB improved by 0.0265988
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.33
ELB improved by 0.0256494
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.305
ELB improved by 0.0249223
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.28
ELB improved by 0.0243834
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.256
ELB improved by 0.0239992
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.232
ELB improved by 0.0237357
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.209
ELB improved by 0.023557
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.185
ELB improved by 0.0234236
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.162
ELB improved by 0.0232925
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.139
ELB improved by 0.0231195
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.116
ELB improved by 0.0228632
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.094
ELB improved by 0.0224909
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.072
ELB improved by 0.0219834
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.05
ELB improved by 0.0213389
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.03
ELB improved by 0.0205715
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.01
ELB improved by 0.0197073
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.991
ELB improved by 0.0187778
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.974
ELB improved by 0.017814
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.957
ELB improved by 0.0168419
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.941
ELB improved by 0.0158799
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.926
ELB improved by 0.0149389
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.912
ELB improved by 0.0140235
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.899
ELB improved by 0.0131335
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.886
ELB improved by 0.0122668
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.875
ELB improved by 0.0114214
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.864
ELB improved by 0.0105964
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.855
ELB improved by 0.00979332
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.051 0.079 1.126
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.029 | 0.005 | 0.033 | |
| getPIPs | 0.027 | 0.004 | 0.030 | |
| graper | 0.043 | 0.005 | 0.049 | |
| makeExampleData | 0.004 | 0.001 | 0.004 | |
| makeExampleDataWithUnequalGroups | 0.005 | 0.000 | 0.005 | |
| plotELBO | 0.125 | 0.005 | 0.130 | |
| plotGroupPenalties | 0.422 | 0.008 | 0.430 | |
| plotPosterior | 0.211 | 0.007 | 0.218 | |
| predict.graper | 1.011 | 0.025 | 1.036 | |
| print.graper | 0.026 | 0.003 | 0.030 | |