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This page was generated on 2025-03-20 12:10 -0400 (Thu, 20 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4756
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4487
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4514
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4441
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4406
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 927/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gwascat 2.38.0  (landing page)
VJ Carey
Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025)
git_url: https://git.bioconductor.org/packages/gwascat
git_branch: RELEASE_3_20
git_last_commit: 65d03e3
git_last_commit_date: 2024-10-29 09:40:18 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

BUILD results for gwascat on kjohnson1

To the developers/maintainers of the gwascat package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gwascat.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gwascat
Version: 2.38.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gwascat
StartedAt: 2025-03-18 01:46:29 -0400 (Tue, 18 Mar 2025)
EndedAt: 2025-03-18 01:48:36 -0400 (Tue, 18 Mar 2025)
EllapsedTime: 127.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gwascat
###
##############################################################################
##############################################################################


* checking for file ‘gwascat/DESCRIPTION’ ... OK
* preparing ‘gwascat’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gwascat.Rmd’ using rmarkdown

Quitting from gwascat.Rmd:59-63 [dotidy]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `vroom_()`:
! 'names' attribute [4496067696] must be the same length as the vector [3]
---
Backtrace:
    ▆
 1. └─gwascat::get_cached_gwascat()
 2.   ├─base::suppressMessages(...)
 3.   │ └─base::withCallingHandlers(...)
 4.   ├─base::suppressWarnings(...)
 5.   │ └─base::withCallingHandlers(...)
 6.   └─readr::read_tsv(BiocFileCache::bfcrpath(cache)[[rev(chk$rid)[1]]])
 7.     └─vroom::vroom(...)
 8.       └─vroom:::vroom_(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gwascat.Rmd' failed with diagnostics:
'names' attribute [4496067696] must be the same length as the vector [3]
--- failed re-building ‘gwascat.Rmd’

--- re-building ‘gwascatOnt.Rmd’ using rmarkdown
--- finished re-building ‘gwascatOnt.Rmd’

SUMMARY: processing the following file failed:
  ‘gwascat.Rmd’

Error: Vignette re-building failed.
Execution halted