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This page was generated on 2026-04-29 10:15 -0400 (Wed, 29 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4988
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4694
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1320/2415HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mgsa 1.60.0  (landing page)
Sebastian Bauer
Snapshot Date: 2026-04-28 14:14 -0400 (Tue, 28 Apr 2026)
git_url: https://git.bioconductor.org/packages/mgsa
git_branch: RELEASE_3_23
git_last_commit: 822d53b
git_last_commit_date: 2026-04-28 08:35:03 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  YES
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  YES
See other builds for mgsa in R Universe.

BUILD BIN results for mgsa on kjohnson3

To the developers/maintainers of the mgsa package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mgsa.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mgsa
Version: 1.60.0
Command: rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.60.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mgsa.buildbin-libdir
StartedAt: 2026-04-29 00:50:17 -0400 (Wed, 29 Apr 2026)
EndedAt: 2026-04-29 00:50:22 -0400 (Wed, 29 Apr 2026)
EllapsedTime: 5.1 seconds
RetCode: 0
Status:   OK  
PackageFile: mgsa_1.60.0.tgz
PackageFileSize: 546.7 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.60.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mgsa.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mgsa.buildbin-libdir mgsa_1.60.0.tar.gz'
>>>>>>> 

* installing *source* package ‘mgsa’ ...
** this is package ‘mgsa’ version ‘1.60.0’
** using staged installation
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -I.  -fPIC  -falign-functions=64 -Wall -g -O2  -c mgsa-core.c -o mgsa-core.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -I.  -fPIC  -falign-functions=64 -Wall -g -O2  -c mgsa.c -o mgsa.o
mgsa.c:67:23: warning: more '%' conversions than data arguments [-Wformat-insufficient-args]
   67 |                         error("Parameter '%s' has been requested to be discrete but no values were specified");
      |                                           ~^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -I.  -fPIC  -falign-functions=64 -Wall -g -O2  -c mt.c -o mt.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mgsa.so mgsa-core.o mgsa.o mt.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Users/biocbuild/bbs-3.23-bioc/meat/mgsa.buildbin-libdir/00LOCK-mgsa/00new/mgsa/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mgsa)


>>>>>>> 
>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR mgsa.buildbin-libdir/mgsa/libs/mgsa.so
>>>>>>> 

>>>>>>> Paths before fix:
mgsa.buildbin-libdir/mgsa/libs/mgsa.so:
	mgsa.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)

>>>>>>> Fix with install_name_tool:
install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libgcc_s.1.1.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libgfortran.5.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libquadmath.0.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"

>>>>>>> Paths after fix:
mgsa.buildbin-libdir/mgsa/libs/mgsa.so:
	mgsa.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)