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This page was generated on 2026-02-05 11:57 -0500 (Thu, 05 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4888
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1330/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mitch 1.22.1  (landing page)
Mark Ziemann
Snapshot Date: 2026-02-02 13:45 -0500 (Mon, 02 Feb 2026)
git_url: https://git.bioconductor.org/packages/mitch
git_branch: RELEASE_3_22
git_last_commit: 317b282
git_last_commit_date: 2026-01-08 03:37:38 -0500 (Thu, 08 Jan 2026)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
See other builds for mitch in R Universe.

BUILD results for mitch on nebbiolo2

To the developers/maintainers of the mitch package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mitch.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mitch
Version: 1.22.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 mitch
StartedAt: 2026-02-03 18:31:25 -0500 (Tue, 03 Feb 2026)
EndedAt: 2026-02-03 18:44:18 -0500 (Tue, 03 Feb 2026)
EllapsedTime: 772.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 mitch
###
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* checking for file ‘mitch/DESCRIPTION’ ... OK
* preparing ‘mitch’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘infiniumMethArrayWorkflow.Rmd’ using rmarkdown

Quitting from infiniumMethArrayWorkflow.Rmd:105-108 [import1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `scan()`:
! cannot read from connection
---
Backtrace:
    ▆
 1. └─utils::read.table(...)
 2.   └─base::scan(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'infiniumMethArrayWorkflow.Rmd' failed with diagnostics:
cannot read from connection
--- failed re-building ‘infiniumMethArrayWorkflow.Rmd’

--- re-building ‘mitchWorkflow.Rmd’ using rmarkdown
trying URL 'https://reactome.org/download/current/ReactomePathways.gmt.zip'
Content type 'application/zip' length 291075 bytes (284 KB)
==================================================
downloaded 284 KB

--- finished re-building ‘mitchWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘infiniumMethArrayWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted