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This page was generated on 2025-12-18 12:07 -0500 (Thu, 18 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4882
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4673
kjohnson1macOS 13.7.5 Venturaarm644.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" 4607
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4671
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1633/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pqsfinder 2.26.0  (landing page)
Jiri Hon
Snapshot Date: 2025-12-15 13:45 -0500 (Mon, 15 Dec 2025)
git_url: https://git.bioconductor.org/packages/pqsfinder
git_branch: RELEASE_3_22
git_last_commit: 82b47c5
git_last_commit_date: 2025-10-29 10:31:44 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson1macOS 13.7.5 Ventura / arm64  ERROR    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped

BUILD results for pqsfinder on kjohnson1

To the developers/maintainers of the pqsfinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pqsfinder.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: pqsfinder
Version: 2.26.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pqsfinder
StartedAt: 2025-12-16 06:45:25 -0500 (Tue, 16 Dec 2025)
EndedAt: 2025-12-16 06:45:41 -0500 (Tue, 16 Dec 2025)
EllapsedTime: 15.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pqsfinder
###
##############################################################################
##############################################################################


* checking for file ‘pqsfinder/DESCRIPTION’ ... OK
* preparing ‘pqsfinder’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘pqsfinder’ ...
** this is package ‘pqsfinder’ version ‘2.26.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using C++11
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pqsfinder.cpp -o pqsfinder.o
pqsfinder.cpp:137:35: warning: variable 'perfects' set but not used [-Wunused-but-set-variable]
  int mismatches = 0, bulges = 0, perfects = 0;
                                  ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
boost_regex/posix_api.cpp:23:10: fatal error: 'boost/cregex.hpp' file not found
#include <boost/cregex.hpp>
         ^~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [boost_regex/posix_api.o] Error 1
ERROR: compilation failed for package ‘pqsfinder’
* removing ‘/private/tmp/RtmpRgOr8i/Rinst6be16467ce8c/pqsfinder’
      -----------------------------------
ERROR: package installation failed