Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-27 12:12 -0500 (Mon, 27 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4494 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1590/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
primirTSS 1.24.0 (landing page) Pumin Li
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | OK | ERROR | ||||||||||
To the developers/maintainers of the primirTSS package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/primirTSS.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: primirTSS |
Version: 1.24.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:primirTSS.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings primirTSS_1.24.0.tar.gz |
StartedAt: 2025-01-24 09:31:13 -0000 (Fri, 24 Jan 2025) |
EndedAt: 2025-01-24 09:31:19 -0000 (Fri, 24 Jan 2025) |
EllapsedTime: 6.0 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: primirTSS.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:primirTSS.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings primirTSS_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/primirTSS.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 12.3.1 (openEuler 12.3.1-36.oe2403) * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘primirTSS/DESCRIPTION’ ... OK * this is package ‘primirTSS’ version ‘1.24.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘primirTSS’ can be installed ... ERROR Installation failed. See ‘/home/biocbuild/bbs-3.20-bioc/meat/primirTSS.Rcheck/00install.out’ for details. * DONE Status: 1 ERROR See ‘/home/biocbuild/bbs-3.20-bioc/meat/primirTSS.Rcheck/00check.log’ for details.
primirTSS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL primirTSS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’ ERROR: dependency ‘phastCons100way.UCSC.hg38’ is not available for package ‘primirTSS’ * removing ‘/home/biocbuild/R/R-4.4.2/site-library/primirTSS’