Multiple platform build/check report for BioC 3.23 - INSTALL results for scider on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4988
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"	4694
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*
INSTALL results for scider on kjohnson3

To the developers/maintainers of the scider package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scider.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
raw results
Summary

Package: scider
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL scider
StartedAt: 2026-04-28 17:00:37 -0400 (Tue, 28 Apr 2026)
EndedAt: 2026-04-28 17:00:40 -0400 (Tue, 28 Apr 2026)
EllapsedTime: 3.2 seconds
RetCode: 1
Status: ERROR
Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL scider
###
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##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘scider’ ...
** this is package ‘scider’ version ‘1.10.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c C_findSNN.cpp -o C_findSNN.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c C_globalMoran.cpp -o C_globalMoran.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c C_localMoran.cpp -o C_localMoran.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rand.cpp -o rand.o
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:792:28: error: too many arguments provided to function-like macro invocation
  792 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:987:9: note: macro 'length' defined here
  987 | #define length(x)               Rf_length(x)
      |         ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:791:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
  791 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:792:9: error: expected ';' at end of declaration list
  792 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:874:28: error: too many arguments provided to function-like macro invocation
  874 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:987:9: note: macro 'length' defined here
  987 | #define length(x)               Rf_length(x)
      |         ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:873:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
  873 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:874:9: error: expected ';' at end of declaration list
  874 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:955:28: error: too many arguments provided to function-like macro invocation
  955 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:987:9: note: macro 'length' defined here
  987 | #define length(x)               Rf_length(x)
      |         ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:954:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
  954 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:955:9: error: expected ';' at end of declaration list
  955 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1036:28: error: too many arguments provided to function-like macro invocation
 1036 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:987:9: note: macro 'length' defined here
  987 | #define length(x)               Rf_length(x)
      |         ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1035:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
 1035 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1036:9: error: expected ';' at end of declaration list
 1036 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1118:28: error: too many arguments provided to function-like macro invocation
 1118 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:987:9: note: macro 'length' defined here
  987 | #define length(x)               Rf_length(x)
      |         ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1117:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
 1117 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1118:9: error: expected ';' at end of declaration list
 1118 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1199:28: error: too many arguments provided to function-like macro invocation
 1199 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:987:9: note: macro 'length' defined here
  987 | #define length(x)               Rf_length(x)
      |         ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1198:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
 1198 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from rand.cpp:2:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/ios:223:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1199:9: error: expected ';' at end of declaration list
 1199 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
18 errors generated.
make: *** [rand.o] Error 1
ERROR: compilation failed for package ‘scider’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/scider’