Back to Long Tests report for BioC 3.22

This page was generated on 2026-02-28 23:55 -0500 (Sat, 28 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4891
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4681
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.16.0  (landing page)
Pierrick Roger
Snapshot Date: 2026-02-28 09:55 -0500 (Sat, 28 Feb 2026)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_22
git_last_commit: 28c1b2d
git_last_commit_date: 2025-10-29 11:12:25 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
merida1macOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on merida1

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
StartedAt: 2026-02-28 16:01:22 -0500 (Sat, 28 Feb 2026)
EndedAt: 2026-02-28 16:02:55 -0500 (Sat, 28 Feb 2026)
EllapsedTime: 93.1 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2026-02-28 16:02:16.161][biodb::testContext]
biodb.INFO [2026-02-28 16:02:16.165][biodb::testContext] ********************************************************************************
biodb.INFO [2026-02-28 16:02:16.167][biodb::testContext] Test context - Generic long tests
biodb.INFO [2026-02-28 16:02:16.168][biodb::testContext] ********************************************************************************
biodb.INFO [2026-02-28 16:02:16.169][biodb::testContext]
biodb.INFO [2026-02-28 16:02:16.176][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.18.0.
biodb.DEBUG[2026-02-28 16:02:16.179][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2026-02-28 16:02:16.189][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-28 16:02:16.190][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2026-02-28 16:02:16.191][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2026-02-28 16:02:16.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.197][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2026-02-28 16:02:16.221][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2026-02-28 16:02:16.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.226][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2026-02-28 16:02:16.228][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2026-02-28 16:02:16.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.232][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2026-02-28 16:02:16.234][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2026-02-28 16:02:16.235][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2026-02-28 16:02:16.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.240][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2026-02-28 16:02:16.241][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2026-02-28 16:02:16.243][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2026-02-28 16:02:16.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.247][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2026-02-28 16:02:16.249][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2026-02-28 16:02:16.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.253][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2026-02-28 16:02:16.254][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2026-02-28 16:02:16.256][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2026-02-28 16:02:16.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.261][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2026-02-28 16:02:16.262][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2026-02-28 16:02:16.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.267][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2026-02-28 16:02:16.268][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2026-02-28 16:02:16.269][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2026-02-28 16:02:16.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.274][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2026-02-28 16:02:16.275][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2026-02-28 16:02:16.277][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2026-02-28 16:02:16.278][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2026-02-28 16:02:16.279][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2026-02-28 16:02:16.281][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2026-02-28 16:02:16.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.286][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2026-02-28 16:02:16.287][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2026-02-28 16:02:16.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.292][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2026-02-28 16:02:16.293][self$set] Set key entries.sep to "|".
biodb.DEBUG[2026-02-28 16:02:16.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.298][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2026-02-28 16:02:16.299][self$set] Set key offline to FALSE.
biodb.DEBUG[2026-02-28 16:02:16.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.304][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2026-02-28 16:02:16.311][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2026-02-28 16:02:16.312][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2026-02-28 16:02:16.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.317][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2026-02-28 16:02:16.318][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2026-02-28 16:02:16.329][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2026-02-28 16:02:16.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.334][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2026-02-28 16:02:16.335][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2026-02-28 16:02:16.337][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2026-02-28 16:02:16.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.344][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2026-02-28 16:02:16.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.409][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2026-02-28 16:02:16.411][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.412][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-28 16:02:16.413][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.415][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.416][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.417][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.418][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-02-28 16:02:16.420][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-28 16:02:16.421][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.422][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2026-02-28 16:02:16.423][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-28 16:02:16.425][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.426][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.427][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-28 16:02:16.427][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-28 16:02:16.427][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-28 16:02:16.427][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-02-28 16:02:16.427][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-02-28 16:02:16.429][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-28 16:02:16.430][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.431][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.432][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-28 16:02:16.434][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.436][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.437][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.438][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-28 16:02:16.440][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-28 16:02:16.441][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.442][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.444][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2026-02-28 16:02:16.446][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.447][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2026-02-28 16:02:16.448][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.450][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-28 16:02:16.451][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.452][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.454][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.455][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.456][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-02-28 16:02:16.457][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-28 16:02:16.459][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.460][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2026-02-28 16:02:16.461][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-28 16:02:16.463][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.464][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.465][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-28 16:02:16.465][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-28 16:02:16.465][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-28 16:02:16.465][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-02-28 16:02:16.465][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-02-28 16:02:16.466][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-28 16:02:16.468][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.469][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.470][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-28 16:02:16.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.474][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.475][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.476][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-28 16:02:16.477][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-28 16:02:16.479][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.480][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.481][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2026-02-28 16:02:16.483][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.485][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2026-02-28 16:02:16.486][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.487][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-28 16:02:16.489][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.490][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.491][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.492][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.494][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-02-28 16:02:16.495][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-28 16:02:16.496][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.497][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2026-02-28 16:02:16.499][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-28 16:02:16.500][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.501][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.502][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.504][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-28 16:02:16.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.507][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-28 16:02:16.509][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.510][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.511][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.512][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.513][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-28 16:02:16.515][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-28 16:02:16.516][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.517][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.519][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2026-02-28 16:02:16.521][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.522][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2026-02-28 16:02:16.523][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.525][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-28 16:02:16.526][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.527][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.528][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.530][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.531][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-02-28 16:02:16.532][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-28 16:02:16.534][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.535][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2026-02-28 16:02:16.536][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-28 16:02:16.537][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.539][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.540][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.541][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-28 16:02:16.542][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.544][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.545][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-28 16:02:16.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.547][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.548][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.550][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.551][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-28 16:02:16.552][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-28 16:02:16.553][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.555][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-28 16:02:16.563][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-28 16:02:16.565][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.656][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2026-02-28 16:02:16.661][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2026-02-28 16:02:16.663][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2026-02-28 16:02:16.665][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2026-02-28 16:02:16.666][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-02-28 16:02:16.668][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2026-02-28 16:02:16.670][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2026-02-28 16:02:16.672][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2026-02-28 16:02:16.673][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2026-02-28 16:02:16.675][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2026-02-28 16:02:16.677][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-02-28 16:02:16.679][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2026-02-28 16:02:16.680][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2026-02-28 16:02:16.682][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2026-02-28 16:02:16.684][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2026-02-28 16:02:16.686][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2026-02-28 16:02:16.687][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2026-02-28 16:02:16.689][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2026-02-28 16:02:16.691][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-02-28 16:02:16.693][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2026-02-28 16:02:16.695][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2026-02-28 16:02:16.696][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2026-02-28 16:02:16.698][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2026-02-28 16:02:16.700][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2026-02-28 16:02:16.702][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2026-02-28 16:02:16.703][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2026-02-28 16:02:16.705][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2026-02-28 16:02:16.707][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2026-02-28 16:02:16.709][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2026-02-28 16:02:16.711][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2026-02-28 16:02:16.713][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2026-02-28 16:02:16.714][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2026-02-28 16:02:16.716][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2026-02-28 16:02:16.718][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2026-02-28 16:02:16.720][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2026-02-28 16:02:16.721][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2026-02-28 16:02:16.723][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2026-02-28 16:02:16.725][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2026-02-28 16:02:16.726][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2026-02-28 16:02:16.728][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2026-02-28 16:02:16.730][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2026-02-28 16:02:16.732][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2026-02-28 16:02:16.734][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2026-02-28 16:02:16.736][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2026-02-28 16:02:16.737][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2026-02-28 16:02:16.739][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2026-02-28 16:02:16.741][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2026-02-28 16:02:16.743][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2026-02-28 16:02:16.745][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2026-02-28 16:02:16.747][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2026-02-28 16:02:16.749][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2026-02-28 16:02:16.751][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2026-02-28 16:02:16.753][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2026-02-28 16:02:16.755][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2026-02-28 16:02:16.757][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2026-02-28 16:02:16.758][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2026-02-28 16:02:16.760][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2026-02-28 16:02:16.762][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2026-02-28 16:02:16.764][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2026-02-28 16:02:16.766][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2026-02-28 16:02:16.768][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2026-02-28 16:02:16.769][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2026-02-28 16:02:16.771][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2026-02-28 16:02:16.773][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2026-02-28 16:02:16.775][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2026-02-28 16:02:16.777][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2026-02-28 16:02:16.778][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-02-28 16:02:16.780][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-02-28 16:02:16.782][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2026-02-28 16:02:16.783][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2026-02-28 16:02:16.785][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2026-02-28 16:02:16.787][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2026-02-28 16:02:16.788][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2026-02-28 16:02:16.790][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2026-02-28 16:02:16.792][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2026-02-28 16:02:16.798][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2026-02-28 16:02:16.800][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2026-02-28 16:02:16.801][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2026-02-28 16:02:16.803][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2026-02-28 16:02:16.805][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2026-02-28 16:02:16.806][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2026-02-28 16:02:16.808][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2026-02-28 16:02:16.810][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2026-02-28 16:02:16.817][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2026-02-28 16:02:16.819][initialize] This is biodb version 1.18.0.
biodb.DEBUG[2026-02-28 16:02:16.822][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-28 16:02:16.823][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.826][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-28 16:02:16.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:16.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:16.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:16.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:16.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:16.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-28 16:02:16.960][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2026-02-28 16:02:16.972][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2026-02-28 16:02:16.975][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.976][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.977][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-28 16:02:16.980][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.981][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-28 16:02:16.982][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.984][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2026-02-28 16:02:16.985][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2026-02-28 16:02:16.986][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-28 16:02:16.987][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:16.989][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2026-02-28 16:02:16.990][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2026-02-28 16:02:16.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2026-02-28 16:02:16.993][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2026-02-28 16:02:16.994][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-28 16:02:16.994][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-28 16:02:16.994][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-28 16:02:16.995][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2026-02-28 16:02:16.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:16.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:16.999][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-28 16:02:17.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-28 16:02:17.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-28 16:02:17.002][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-28 16:02:17.003][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-02-28 16:02:17.003][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2026-02-28 16:02:17.005][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-28 16:02:17.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-28 16:02:17.007][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2026-02-28 16:02:17.008][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2026-02-28 16:02:17.008][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2026-02-28 16:02:17.016][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-02-28 16:02:17.018][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-02-28 16:02:17.020][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2026-02-28 16:02:17.026][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-02-28 16:02:17.028][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-02-28 16:02:17.030][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-02-28 16:02:17.053][super$initialize] Initialize connector chebi.
biodb.DEBUG[2026-02-28 16:02:17.070][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2026-02-28 16:02:17.080][biodb::testThat]
biodb.INFO [2026-02-28 16:02:17.081][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2026-02-28 16:02:17.083][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:17.084][biodb::testThat]
biodb.TRACE[2026-02-28 16:02:17.088][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2026-02-28 16:02:17.090][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-28 16:02:17.094][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-28 16:02:17.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:17.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:17.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:17.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:17.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:17.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:17.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-28 16:02:17.135][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.138][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.139][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.162][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:17.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:17.165][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.166][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:17.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.207][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:17.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:17.210][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.211][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:17.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:17.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:17.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:17.220][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.221][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:17.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:17.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.230][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.232][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.241][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.242][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.249][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:17.250][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.252][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.253][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.262][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.263][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.280][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:17.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:17.283][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.284][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-28 16:02:17.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.294][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.295][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.297][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-28 16:02:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:17.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:17.304][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.306][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:17.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:17.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-28 16:02:17.408][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2026-02-28 16:02:17.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:17.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:17.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:17.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-28 16:02:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-28 16:02:17.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-28 16:02:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-28 16:02:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-28 16:02:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-28 16:02:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-28 16:02:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-28 16:02:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.637][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.640][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.641][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:17.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.676][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.677][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:17.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:17.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:17.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:17.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.713][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:17.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:17.715][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.716][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:17.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:17.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:17.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.748][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:17.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:17.751][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.752][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.784][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.787][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.788][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.824][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.825][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:17.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:17.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.857][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:17.859][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:17.860][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.861][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.897][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.900][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.901][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.935][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.936][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:17.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:17.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:17.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:17.971][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.972][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:17.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:17.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.006][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.008][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.042][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.043][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.060][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.063][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.064][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.071][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.073][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.074][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.085][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.088][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.089][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.095][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.096][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.098][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.099][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.108][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.109][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.115][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.116][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.118][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.119][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.125][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.128][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.129][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.135][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.138][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.139][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.145][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.147][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.148][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.149][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.155][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.158][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.159][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:18.167][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:18.168][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.169][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.192][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2026-02-28 16:02:18.240][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-28 16:02:18.241][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-28 16:02:18.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:18.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:18.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:18.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:18.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:18.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:18.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-28 16:02:18.258][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.260][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.262][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.295][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.297][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.299][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.305][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.308][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.309][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.318][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.319][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.328][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.330][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.339][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.340][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.346][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:18.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.349][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.350][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:18.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.359][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.360][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.367][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.369][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.371][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-28 16:02:18.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.380][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.381][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-28 16:02:18.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:18.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:18.391][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.392][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:18.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-28 16:02:18.449][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2026-02-28 16:02:18.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:18.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.512][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-28 16:02:18.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-28 16:02:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-28 16:02:18.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-28 16:02:18.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.522][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-28 16:02:18.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-28 16:02:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-28 16:02:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-28 16:02:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.642][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.645][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.650][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:18.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.685][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.686][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.718][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.721][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.722][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.755][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.757][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.758][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:18.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.791][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:18.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.793][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.795][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.830][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.831][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.868][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.871][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.872][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:18.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.905][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.907][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.908][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:18.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.940][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.943][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.944][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.976][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.978][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.980][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:18.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:18.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:18.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:18.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.014][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.016][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.055][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.057][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.091][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.092][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.109][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.112][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.113][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.120][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.123][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.124][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.131][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.132][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.133][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.135][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.145][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.146][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.153][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.156][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.157][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.164][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.165][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.167][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.168][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.177][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.178][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.188][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.189][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.196][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.197][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.198][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.200][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.207][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.210][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.211][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.220][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.222][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.229][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2026-02-28 16:02:19.230][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-28 16:02:19.232][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-28 16:02:19.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:19.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:19.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:19.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:19.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:19.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:19.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-28 16:02:19.249][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.252][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.258][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.265][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.267][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.268][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.275][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.278][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.279][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.289][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.290][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.298][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.299][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.300][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.308][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.310][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.311][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.318][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:19.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.320][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.321][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-28 16:02:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.331][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.332][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.339][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.342][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.343][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.350][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-28 16:02:19.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.353][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.354][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-28 16:02:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.365][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-28 16:02:19.422][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2026-02-28 16:02:19.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-28 16:02:19.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-28 16:02:19.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-28 16:02:19.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-28 16:02:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-28 16:02:19.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-28 16:02:19.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-28 16:02:19.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-28 16:02:19.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.574][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.577][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.578][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.612][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.614][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:19.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.652][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.654][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:19.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.689][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:19.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.717][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.725][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.726][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.761][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.763][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:19.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.798][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.800][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:19.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.832][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.833][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.835][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.836][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.837][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.872][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.874][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.876][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.908][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.910][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.912][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:19.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.945][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.947][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.949][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.966][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:19.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:19.969][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.970][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.977][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-28 16:02:19.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-28 16:02:19.979][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.981][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.987][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-28 16:02:19.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-28 16:02:19.990][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:19.991][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:19.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-28 16:02:20.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-28 16:02:20.001][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.002][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:20.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-28 16:02:20.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-28 16:02:20.011][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.012][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:20.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:20.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-28 16:02:20.022][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.023][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:20.029][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:20.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-28 16:02:20.032][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.033][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:20.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:20.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:20.042][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.043][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:20.054][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-28 16:02:20.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-28 16:02:20.057][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.058][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:20.065][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:20.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:20.067][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.068][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:20.075][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-28 16:02:20.076][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-28 16:02:20.078][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:20.079][ef$get] fields variable is a list.
biodb.INFO [2026-02-28 16:02:20.089][biodb::testThat]
biodb.INFO [2026-02-28 16:02:20.090][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2026-02-28 16:02:20.092][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:20.093][biodb::testThat]
biodb.DEBUG[2026-02-28 16:02:20.096][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2026-02-28 16:02:20.134][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2026-02-28 16:02:20.138][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-02-28 16:02:20.140][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2026-02-28 16:02:20.141][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-02-28 16:02:20.143][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2026-02-28 16:02:20.144][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2026-02-28 16:02:20.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:20.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:20.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:20.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:20.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:20.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:20.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-28 16:02:20.166][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
fscache.INFO [2026-02-28 16:02:20.193][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-02-28 16:02:20.195][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:20.196][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:20.197][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:20.600][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:20.602][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:20.603][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:20.604][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:21.019][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:21.020][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:21.021][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:21.023][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:21.414][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:21.415][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:21.417][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:21.418][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:21.828][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:21.829][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:21.830][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:21.832][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:22.223][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:22.224][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:22.225][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:22.227][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:22.636][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:22.638][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:22.639][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:22.640][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:23.032][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:23.034][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:23.035][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:23.036][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:23.446][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:23.447][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:23.449][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:23.450][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:23.842][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:23.843][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:23.844][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:23.846][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:24.255][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:24.256][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:24.257][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:24.259][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:24.652][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:24.653][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:24.655][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:24.656][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:25.065][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:25.066][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:25.067][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:25.069][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:25.460][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:25.461][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:25.463][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:25.464][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:25.873][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:25.874][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:25.881][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:25.893][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:26.284][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:26.285][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:26.286][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:26.288][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:26.696][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:26.698][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:26.699][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:26.701][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:27.092][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:27.093][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:27.094][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:27.096][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:27.505][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:27.506][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:27.507][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:27.509][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-28 16:02:27.901][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-28 16:02:27.902][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:27.904][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:27.905][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-28 16:02:28.316][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
biodb.DEBUG[2026-02-28 16:02:28.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:28.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:28.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:28.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:28.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:28.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:28.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-28 16:02:28.353][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
fscache.INFO [2026-02-28 16:02:28.395][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-02-28 16:02:28.416][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:28.417][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:28.419][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:28.810][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:28.811][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:28.812][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:28.813][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:29.227][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:29.229][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:29.230][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:29.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:29.623][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:29.624][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:29.625][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:29.627][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:30.038][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:30.039][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:30.041][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:30.042][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:30.441][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:30.443][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:30.444][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:30.445][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:31.121][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:31.122][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:31.124][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:31.125][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:31.516][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:31.517][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:31.519][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:31.520][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:31.929][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:31.931][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:31.932][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:31.933][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:32.327][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:32.328][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:32.330][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:32.331][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:32.743][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:32.744][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:32.745][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:32.747][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:33.144][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:33.146][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:33.147][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:33.148][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:33.561][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:33.562][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:33.564][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:33.565][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:33.973][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:33.974][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:33.975][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:33.977][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:34.388][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:34.389][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:34.391][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:34.392][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:34.785][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:34.786][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:34.787][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:34.789][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:35.200][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:35.201][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:35.203][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:35.204][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:35.596][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:35.597][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:35.598][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:35.600][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:36.010][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:36.012][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:36.013][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:36.015][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-28 16:02:36.409][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-28 16:02:36.411][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:36.412][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:36.413][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-28 16:02:36.823][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
biodb.DEBUG[2026-02-28 16:02:36.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:36.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:36.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:36.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:36.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:36.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:36.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-28 16:02:36.838][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
fscache.INFO [2026-02-28 16:02:36.841][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-02-28 16:02:36.843][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:36.844][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:36.846][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:37.239][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:37.240][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:37.241][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:37.243][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:37.654][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:37.655][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:37.656][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:37.658][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:38.048][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:38.049][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:38.051][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:38.052][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:38.461][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:38.463][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:38.464][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:38.466][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:45.000][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:45.001][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:45.002][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:45.004][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:45.414][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:45.416][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:45.417][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:45.418][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:45.811][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:45.812][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:45.813][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:45.815][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:46.224][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:46.225][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:46.226][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:46.228][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:46.623][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:46.624][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:46.625][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:46.627][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:47.037][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:47.039][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:47.040][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:47.042][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:47.435][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:47.436][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:47.437][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:47.438][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:47.848][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:47.849][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:47.851][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:47.852][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:48.243][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:48.244][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:48.246][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:48.247][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:48.657][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:48.659][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:48.660][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:48.661][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:49.053][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:49.059][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:49.081][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:49.082][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:49.494][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:49.495][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:49.496][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:49.498][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:49.890][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:49.892][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:49.893][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:49.894][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:50.304][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-28 16:02:50.306][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-28 16:02:50.307][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-28 16:02:50.309][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-28 16:02:50.702][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-28 16:02:50.703][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-28 16:02:50.705][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-28 16:02:50.706][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-28 16:02:51.116][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
fscache.INFO [2026-02-28 16:02:51.119][cch$saveContents] Save 3 contents to /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-02-28 16:02:51.120][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2026-02-28 16:02:51.122][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2026-02-28 16:02:51.123][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2026-02-28 16:02:51.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:51.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:51.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:51.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:51.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:51.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:51.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-28 16:02:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-28 16:02:51.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:51.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:51.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:51.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:51.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:51.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:51.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-28 16:02:51.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-28 16:02:51.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-28 16:02:51.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:51.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:51.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:51.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:51.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:51.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-28 16:02:51.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-28 16:02:51.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-28 16:02:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-28 16:02:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-28 16:02:51.297][self$createEntryFromContent] Accession numbers: NA, NA, NA.
biodb.DEBUG[2026-02-28 16:02:51.298][self$createEntryFromContent] Found 3 entry/ies without an accession number. Set it/them to NULL.
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:51.479][biodb::testThat]
biodb.INFO [2026-02-28 16:02:51.480][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2026-02-28 16:02:51.481][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:51.483][biodb::testThat]
biodb.TRACE[2026-02-28 16:02:51.487][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:51.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:51.489][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:51.491][ef$get] fields variable is a list.
biodb.DEBUG[2026-02-28 16:02:51.492][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:51.868][biodb::testThat]
biodb.INFO [2026-02-28 16:02:51.869][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2026-02-28 16:02:51.871][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:51.872][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:52.031][biodb::testThat]
biodb.INFO [2026-02-28 16:02:52.033][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2026-02-28 16:02:52.034][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:52.035][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:52.202][biodb::testThat]
biodb.INFO [2026-02-28 16:02:52.203][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2026-02-28 16:02:52.204][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:52.205][biodb::testThat]
biodb.INFO [2026-02-28 16:02:52.217][biodb::testThat]
biodb.INFO [2026-02-28 16:02:52.218][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2026-02-28 16:02:52.220][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:52.221][biodb::testThat]
biodb.INFO [2026-02-28 16:02:52.231][biodb::testThat]
biodb.INFO [2026-02-28 16:02:52.232][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2026-02-28 16:02:52.233][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:52.235][biodb::testThat]
biodb.DEBUG[2026-02-28 16:02:52.240][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2026-02-28 16:02:52.814][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2026-02-28 16:02:53.223][biodb::testThat]
biodb.INFO [2026-02-28 16:02:53.224][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2026-02-28 16:02:53.225][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:53.226][biodb::testThat]
biodb.TRACE[2026-02-28 16:02:53.253][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:53.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:53.255][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:53.256][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:53.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:53.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:53.260][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:53.261][ef$get] fields variable is a list.
biodb.INFO [2026-02-28 16:02:53.263][biodb::testThat]
biodb.INFO [2026-02-28 16:02:53.264][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2026-02-28 16:02:53.266][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:53.267][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:53.554][biodb::testThat]
biodb.INFO [2026-02-28 16:02:53.556][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2026-02-28 16:02:53.557][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:53.558][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:53.629][biodb::testThat]
biodb.INFO [2026-02-28 16:02:53.631][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2026-02-28 16:02:53.632][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:53.633][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:53.744][biodb::testThat]
biodb.INFO [2026-02-28 16:02:53.746][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2026-02-28 16:02:53.747][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:53.749][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.TRACE[2026-02-28 16:02:53.820][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-28 16:02:53.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-28 16:02:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:53.825][ef$get] fields variable is a list.
biodb.TRACE[2026-02-28 16:02:53.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:53.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-28 16:02:53.829][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-28 16:02:53.831][ef$get] fields variable is a list.
biodb.INFO [2026-02-28 16:02:53.833][biodb::testThat]
biodb.INFO [2026-02-28 16:02:53.834][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2026-02-28 16:02:53.836][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:53.837][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:53.948][biodb::testThat]
biodb.INFO [2026-02-28 16:02:53.950][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2026-02-28 16:02:53.951][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-28 16:02:53.952][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-28 16:02:54.023][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2026-02-28 16:02:54.024][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2026-02-28 16:02:54.025][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2026-02-28 16:02:54.026][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-28 16:02:54.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-28 16:02:54.029][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-28 16:02:54.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-28 16:02:54.031][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2026-02-28 16:02:54.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): RT unit is defined when there is an RT value. ──
Error in `eval_bare(expr, quo_get_env(quo))`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(...)
 4.     └─testthat::quasi_label(enquo(object), label)
 5.       └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Error in `entry$getFieldValue(f)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `any(vapply(entries, is.null, FUN.VALUE = TRUE))` to be FALSE.
Differences:
`actual`:   TRUE 
`expected`: FALSE

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─testthat::expect_false(any(vapply(entries, is.null, FUN.VALUE = TRUE)))
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `e` to inherit from "character".
Actual inheritance: "NULL"
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_is(e, "BiodbEntry")
── Failure ('test_long_100_generic.R:17:1'): We can search for a compound ──────
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)

[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
Error:
! Test failures.
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
  Error in `e$hasField(mf)`: attempt to apply non-function
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  
  [ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
  Error:
  ! Test failures.
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)