Back to Long Tests report for BioC 3.22

This page was generated on 2025-12-27 23:55 -0500 (Sat, 27 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4883
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4673
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.16.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-12-27 09:55 -0500 (Sat, 27 Dec 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_22
git_last_commit: 28c1b2d
git_last_commit_date: 2025-10-29 11:12:25 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
merida1macOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on merida1

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
StartedAt: 2025-12-27 16:01:29 -0500 (Sat, 27 Dec 2025)
EndedAt: 2025-12-27 16:03:00 -0500 (Sat, 27 Dec 2025)
EllapsedTime: 91.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-12-27 16:02:22.629][biodb::testContext]
biodb.INFO [2025-12-27 16:02:22.633][biodb::testContext] ********************************************************************************
biodb.INFO [2025-12-27 16:02:22.634][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-12-27 16:02:22.635][biodb::testContext] ********************************************************************************
biodb.INFO [2025-12-27 16:02:22.636][biodb::testContext]
biodb.INFO [2025-12-27 16:02:22.643][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.18.0.
biodb.DEBUG[2025-12-27 16:02:22.646][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-12-27 16:02:22.654][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-12-27 16:02:22.656][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-12-27 16:02:22.657][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-12-27 16:02:22.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.662][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-12-27 16:02:22.687][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-12-27 16:02:22.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.692][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-12-27 16:02:22.693][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-12-27 16:02:22.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.698][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-12-27 16:02:22.699][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-12-27 16:02:22.701][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-12-27 16:02:22.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.705][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-12-27 16:02:22.707][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-12-27 16:02:22.717][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-12-27 16:02:22.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.722][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-12-27 16:02:22.723][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-12-27 16:02:22.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.727][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-12-27 16:02:22.729][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-12-27 16:02:22.730][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-12-27 16:02:22.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.734][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-12-27 16:02:22.736][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-12-27 16:02:22.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.740][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-12-27 16:02:22.741][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-12-27 16:02:22.743][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-12-27 16:02:22.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.747][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-12-27 16:02:22.749][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-12-27 16:02:22.750][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-12-27 16:02:22.751][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-12-27 16:02:22.752][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-12-27 16:02:22.754][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-12-27 16:02:22.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.758][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-12-27 16:02:22.759][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-12-27 16:02:22.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.764][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-12-27 16:02:22.765][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-12-27 16:02:22.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.770][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-12-27 16:02:22.771][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-12-27 16:02:22.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.775][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-12-27 16:02:22.777][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-12-27 16:02:22.778][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-12-27 16:02:22.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.783][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-12-27 16:02:22.784][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-12-27 16:02:22.795][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-12-27 16:02:22.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.799][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-12-27 16:02:22.801][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-12-27 16:02:22.802][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-12-27 16:02:22.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:22.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:22.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:22.809][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-12-27 16:02:22.851][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.872][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-12-27 16:02:22.873][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.875][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-12-27 16:02:22.876][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.877][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.878][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.879][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.881][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-12-27 16:02:22.882][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-12-27 16:02:22.883][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.884][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-12-27 16:02:22.886][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-12-27 16:02:22.887][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.888][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.889][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-12-27 16:02:22.889][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-12-27 16:02:22.889][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-12-27 16:02:22.889][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-12-27 16:02:22.889][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-12-27 16:02:22.891][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-12-27 16:02:22.892][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:22.893][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:22.894][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-12-27 16:02:22.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:22.897][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:22.898][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.899][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.900][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-12-27 16:02:22.901][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-12-27 16:02:22.902][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.904][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.905][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-12-27 16:02:22.907][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.909][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-12-27 16:02:22.910][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.911][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-12-27 16:02:22.912][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.914][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.915][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.916][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.917][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-12-27 16:02:22.919][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-12-27 16:02:22.920][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.921][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-12-27 16:02:22.922][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-12-27 16:02:22.924][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.925][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.926][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-12-27 16:02:22.926][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-12-27 16:02:22.926][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-12-27 16:02:22.926][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-12-27 16:02:22.926][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-12-27 16:02:22.928][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-12-27 16:02:22.929][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:22.930][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:22.931][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-12-27 16:02:22.937][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:22.938][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:22.940][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.941][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.942][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-12-27 16:02:22.943][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-12-27 16:02:22.944][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.946][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.947][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-12-27 16:02:22.949][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.950][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-12-27 16:02:22.952][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.953][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-12-27 16:02:22.954][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.956][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.957][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.958][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.959][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-12-27 16:02:22.961][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-12-27 16:02:22.962][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.963][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-12-27 16:02:22.964][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-12-27 16:02:22.966][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.967][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.968][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.970][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-12-27 16:02:22.971][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:22.972][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:22.973][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-12-27 16:02:22.974][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:22.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:22.977][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.978][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.979][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-12-27 16:02:22.980][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-12-27 16:02:22.981][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.983][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:22.984][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-12-27 16:02:22.986][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.988][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-12-27 16:02:22.989][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.990][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-12-27 16:02:22.991][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:22.992][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.994][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:22.995][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-12-27 16:02:22.996][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-12-27 16:02:22.997][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-12-27 16:02:22.999][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:23.000][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-12-27 16:02:23.001][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-12-27 16:02:23.003][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:23.004][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:23.005][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:23.006][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-12-27 16:02:23.007][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:23.009][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:23.010][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-12-27 16:02:23.011][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:23.012][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:23.013][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-12-27 16:02:23.015][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:23.016][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-12-27 16:02:23.017][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-12-27 16:02:23.018][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:23.019][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-12-27 16:02:23.023][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-12-27 16:02:23.025][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.118][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-12-27 16:02:23.122][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-12-27 16:02:23.124][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-12-27 16:02:23.126][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-12-27 16:02:23.128][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-12-27 16:02:23.130][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-12-27 16:02:23.131][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-12-27 16:02:23.133][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-12-27 16:02:23.135][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-12-27 16:02:23.137][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-12-27 16:02:23.138][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-12-27 16:02:23.140][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-12-27 16:02:23.142][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-12-27 16:02:23.144][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-12-27 16:02:23.145][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-12-27 16:02:23.147][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-12-27 16:02:23.154][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-12-27 16:02:23.156][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-12-27 16:02:23.157][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-12-27 16:02:23.159][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-12-27 16:02:23.161][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-12-27 16:02:23.163][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-12-27 16:02:23.165][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-12-27 16:02:23.167][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-12-27 16:02:23.169][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-12-27 16:02:23.171][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-12-27 16:02:23.173][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-12-27 16:02:23.175][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-12-27 16:02:23.177][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-12-27 16:02:23.179][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-12-27 16:02:23.181][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-12-27 16:02:23.183][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-12-27 16:02:23.185][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-12-27 16:02:23.187][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-12-27 16:02:23.189][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-12-27 16:02:23.191][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-12-27 16:02:23.193][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-12-27 16:02:23.194][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-12-27 16:02:23.196][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-12-27 16:02:23.198][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-12-27 16:02:23.200][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-12-27 16:02:23.202][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-12-27 16:02:23.203][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-12-27 16:02:23.205][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-12-27 16:02:23.207][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-12-27 16:02:23.210][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-12-27 16:02:23.212][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-12-27 16:02:23.214][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-12-27 16:02:23.216][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-12-27 16:02:23.218][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-12-27 16:02:23.219][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-12-27 16:02:23.221][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-12-27 16:02:23.223][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-12-27 16:02:23.225][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-12-27 16:02:23.227][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-12-27 16:02:23.228][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-12-27 16:02:23.230][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-12-27 16:02:23.232][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-12-27 16:02:23.234][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-12-27 16:02:23.236][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-12-27 16:02:23.238][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-12-27 16:02:23.240][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-12-27 16:02:23.241][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-12-27 16:02:23.243][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-12-27 16:02:23.245][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-12-27 16:02:23.246][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-12-27 16:02:23.248][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-12-27 16:02:23.250][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-12-27 16:02:23.252][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-12-27 16:02:23.253][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-12-27 16:02:23.255][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-12-27 16:02:23.257][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-12-27 16:02:23.259][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-12-27 16:02:23.261][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-12-27 16:02:23.263][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-12-27 16:02:23.265][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-12-27 16:02:23.267][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-12-27 16:02:23.269][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-12-27 16:02:23.271][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-12-27 16:02:23.273][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-12-27 16:02:23.274][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-12-27 16:02:23.277][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-12-27 16:02:23.279][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-12-27 16:02:23.287][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-12-27 16:02:23.289][initialize] This is biodb version 1.18.0.
biodb.DEBUG[2025-12-27 16:02:23.293][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-12-27 16:02:23.294][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.297][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-12-27 16:02:23.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-12-27 16:02:23.441][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-12-27 16:02:23.454][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-12-27 16:02:23.457][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:23.458][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-12-27 16:02:23.459][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:23.461][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-12-27 16:02:23.462][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:23.463][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-12-27 16:02:23.464][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:23.465][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-12-27 16:02:23.467][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-12-27 16:02:23.468][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-12-27 16:02:23.469][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:23.471][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-12-27 16:02:23.472][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-12-27 16:02:23.473][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-12-27 16:02:23.475][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-12-27 16:02:23.476][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-12-27 16:02:23.476][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-12-27 16:02:23.476][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-12-27 16:02:23.477][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-12-27 16:02:23.478][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:23.479][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:23.481][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-12-27 16:02:23.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-12-27 16:02:23.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-12-27 16:02:23.484][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-12-27 16:02:23.485][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-12-27 16:02:23.485][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-12-27 16:02:23.487][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-12-27 16:02:23.488][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-12-27 16:02:23.489][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-12-27 16:02:23.490][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-12-27 16:02:23.490][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-12-27 16:02:23.498][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-12-27 16:02:23.500][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-12-27 16:02:23.502][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-12-27 16:02:23.504][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-12-27 16:02:23.506][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-12-27 16:02:23.508][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-12-27 16:02:23.531][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-12-27 16:02:23.547][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-12-27 16:02:23.557][biodb::testThat]
biodb.INFO [2025-12-27 16:02:23.559][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-12-27 16:02:23.560][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:23.561][biodb::testThat]
biodb.TRACE[2025-12-27 16:02:23.565][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-12-27 16:02:23.567][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-12-27 16:02:23.571][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-12-27 16:02:23.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:23.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:23.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:23.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:23.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:23.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:23.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-12-27 16:02:23.622][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.626][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:23.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:23.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.652][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:23.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.693][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:23.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:23.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.696][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:23.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.703][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:23.704][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:23.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.707][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.717][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:23.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:23.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.728][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.734][ef$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:23.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:23.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.738][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:23.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:23.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.748][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:23.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.755][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:23.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:23.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.759][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:23.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.766][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-12-27 16:02:23.767][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:23.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.774][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-12-27 16:02:23.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:23.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:23.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:23.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.785][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:23.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:23.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:23.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:23.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:23.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-12-27 16:02:23.885][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-12-27 16:02:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:23.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:23.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:23.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:23.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:23.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:23.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-12-27 16:02:23.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-12-27 16:02:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-12-27 16:02:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-12-27 16:02:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-12-27 16:02:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-12-27 16:02:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-12-27 16:02:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-12-27 16:02:24.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.113][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.117][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.158][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.189][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.193][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.224][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.228][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.263][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.300][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.337][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.338][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.340][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.372][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.375][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.407][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.411][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.443][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.447][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.488][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.523][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.539][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.543][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.549][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.553][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.563][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.573][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.583][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.593][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.603][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.613][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.619][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.623][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.629][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.633][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.643][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.670][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-12-27 16:02:24.716][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-12-27 16:02:24.718][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-12-27 16:02:24.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:24.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:24.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:24.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:24.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:24.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:24.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-12-27 16:02:24.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.738][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.767][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.771][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:24.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:24.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.778][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.782][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:24.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.793][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.807][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.815][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.817][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.824][ef$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:24.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.827][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.829][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:24.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.838][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:24.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.848][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:24.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:24.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.855][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-12-27 16:02:24.856][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.859][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-12-27 16:02:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.869][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:24.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:24.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-12-27 16:02:24.926][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-12-27 16:02:24.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:24.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:24.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:24.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:24.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-12-27 16:02:24.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-12-27 16:02:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-12-27 16:02:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-12-27 16:02:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:24.998][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-12-27 16:02:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-12-27 16:02:25.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-12-27 16:02:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-12-27 16:02:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.119][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.159][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.190][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.194][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.226][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.230][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.262][ef$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:25.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.266][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.267][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:25.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.299][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.302][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.338][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.342][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.373][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.374][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.377][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.408][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.409][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.412][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.438][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.445][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.447][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.485][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.489][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.526][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.562][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.583][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.589][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.594][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.600][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.605][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.615][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.626][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.636][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.643][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.645][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.647][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.658][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.670][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.674][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.681][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.685][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.692][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.697][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.706][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-12-27 16:02:25.709][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-12-27 16:02:25.711][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-12-27 16:02:25.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:25.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:25.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:25.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:25.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:25.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:25.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-12-27 16:02:25.730][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.734][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.741][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.745][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.752][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.756][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.768][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.775][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.779][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.789][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.796][ef$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:25.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.800][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-12-27 16:02:25.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.811][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.818][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.822][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.830][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-12-27 16:02:25.831][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.834][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-12-27 16:02:25.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:25.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.842][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.844][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:25.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-12-27 16:02:25.906][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-12-27 16:02:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:25.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:25.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-12-27 16:02:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-12-27 16:02:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-12-27 16:02:25.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-12-27 16:02:25.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-12-27 16:02:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-12-27 16:02:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-12-27 16:02:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-12-27 16:02:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:25.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:25.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:25.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:25.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:26.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:26.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.064][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.097][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:26.098][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.101][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:26.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:26.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:26.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:26.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.133][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:26.135][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:26.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.137][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.172][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.209][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.212][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.244][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.247][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.283][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:26.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:26.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:26.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.315][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:26.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:26.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.319][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:26.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:26.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.351][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.355][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.391][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:26.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:26.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.395][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:26.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:26.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:26.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.427][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:26.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:26.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.431][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:26.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.448][ef$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:26.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:26.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.452][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.458][ef$get] Asked field names are: charge.
biodb.TRACE[2025-12-27 16:02:26.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-12-27 16:02:26.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.462][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-12-27 16:02:26.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-12-27 16:02:26.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.472][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-12-27 16:02:26.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-12-27 16:02:26.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.483][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-12-27 16:02:26.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.493][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.502][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-12-27 16:02:26.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.504][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.511][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-12-27 16:02:26.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.515][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:26.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.525][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.531][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-12-27 16:02:26.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.535][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.542][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:26.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:26.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.546][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:26.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-12-27 16:02:26.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-12-27 16:02:26.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:26.562][ef$get] fields variable is a list.
biodb.INFO [2025-12-27 16:02:26.572][biodb::testThat]
biodb.INFO [2025-12-27 16:02:26.574][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-12-27 16:02:26.575][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:26.576][biodb::testThat]
biodb.DEBUG[2025-12-27 16:02:26.579][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-12-27 16:02:26.596][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-12-27 16:02:26.601][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-12-27 16:02:26.602][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-12-27 16:02:26.604][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-12-27 16:02:26.605][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-12-27 16:02:26.606][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-12-27 16:02:26.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:26.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:26.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:26.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:26.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:26.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:26.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-12-27 16:02:26.628][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
fscache.INFO [2025-12-27 16:02:26.656][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-12-27 16:02:26.668][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:26.669][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:26.671][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:27.053][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:27.054][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:27.055][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:27.056][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:27.449][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:27.451][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:27.452][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:27.454][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:27.828][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:27.829][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:27.830][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:27.831][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:28.217][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:28.219][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:28.220][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:28.222][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:28.596][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:28.597][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:28.599][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:28.600][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:28.989][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:28.990][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:28.992][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:28.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:29.367][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:29.368][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:29.370][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:29.371][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:29.757][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:29.758][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:29.760][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:29.761][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:30.136][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:30.137][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:30.139][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:30.140][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:30.526][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:30.527][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:30.540][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:30.542][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:30.917][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:30.918][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:30.920][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:30.921][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:31.307][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:31.308][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:31.310][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:31.311][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:31.685][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:31.686][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:31.687][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:31.688][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:32.075][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:32.077][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:32.078][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:32.079][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:32.456][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:32.457][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:32.458][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:32.459][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:32.846][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:32.847][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:32.849][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:32.850][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:33.226][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:33.227][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:33.228][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:33.230][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:33.620][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:33.621][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:33.622][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:33.624][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2025-12-27 16:02:33.998][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2025-12-27 16:02:33.999][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:34.001][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:34.002][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2025-12-27 16:02:34.390][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
biodb.DEBUG[2025-12-27 16:02:34.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:34.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:34.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:34.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:34.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:34.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:34.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-12-27 16:02:34.427][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
fscache.INFO [2025-12-27 16:02:34.467][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-12-27 16:02:34.499][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:34.501][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:34.502][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:34.875][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:34.877][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:34.878][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:34.879][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:35.655][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:35.657][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:35.658][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:35.660][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:36.034][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:36.036][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:36.037][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:36.038][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:36.427][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:36.428][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:36.430][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:36.431][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:36.805][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:36.807][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:36.808][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:36.809][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:37.194][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:37.196][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:37.197][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:37.198][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:37.573][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:37.575][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:37.576][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:37.578][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:38.201][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:38.202][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:38.203][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:38.205][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:38.584][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:38.586][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:38.587][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:38.588][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:38.975][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:38.976][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:38.977][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:38.979][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:39.375][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:39.377][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:39.379][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:39.381][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:39.884][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:39.885][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:39.886][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:39.888][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:40.261][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:40.263][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:40.264][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:40.265][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:40.652][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:40.653][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:40.654][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:40.656][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:41.032][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:41.033][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:41.034][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:41.036][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:41.423][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:41.424][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:41.425][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:41.427][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:41.801][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:41.802][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:41.803][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:41.805][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:47.969][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:47.970][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:47.972][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:47.973][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2025-12-27 16:02:48.352][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2025-12-27 16:02:48.354][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:48.355][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:48.356][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2025-12-27 16:02:48.747][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
biodb.DEBUG[2025-12-27 16:02:48.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:48.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:48.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:48.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:48.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:48.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:48.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-12-27 16:02:48.775][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
fscache.INFO [2025-12-27 16:02:48.780][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-12-27 16:02:48.783][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:48.786][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:48.791][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:49.275][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:49.276][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:49.278][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:49.279][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:49.909][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:49.910][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:49.911][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:49.932][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:50.306][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:50.307][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:50.308][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:50.310][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:50.697][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:50.698][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:50.700][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:50.701][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:51.076][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:51.077][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:51.079][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:51.080][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:51.467][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:51.468][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:51.469][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:51.471][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:51.845][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:51.847][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:51.848][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:51.850][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:52.238][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:52.240][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:52.242][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:52.244][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:52.618][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:52.619][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:52.620][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:52.621][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:53.008][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:53.009][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:53.010][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:53.012][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:53.385][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:53.387][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:53.388][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:53.389][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:53.776][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:53.777][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:53.778][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:53.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:54.154][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:54.155][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:54.157][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:54.158][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:54.544][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:54.546][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:54.547][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:54.548][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:54.922][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:54.923][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:54.925][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:54.926][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:55.311][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:55.312][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:55.314][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:55.315][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:55.690][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:55.691][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:55.693][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:55.694][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:56.081][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2025-12-27 16:02:56.082][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-12-27 16:02:56.084][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-12-27 16:02:56.085][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2025-12-27 16:02:56.461][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2025-12-27 16:02:56.462][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-12-27 16:02:56.463][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-12-27 16:02:56.464][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2025-12-27 16:02:56.854][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
fscache.INFO [2025-12-27 16:02:56.857][cch$saveContents] Save 3 contents to /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-12-27 16:02:56.859][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-12-27 16:02:56.861][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-12-27 16:02:56.864][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-12-27 16:02:56.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:56.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:56.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:56.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:56.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:56.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:56.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-12-27 16:02:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-12-27 16:02:56.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:56.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:56.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:56.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:56.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:56.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:56.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-12-27 16:02:56.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:56.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:56.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:56.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-12-27 16:02:56.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-12-27 16:02:56.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:56.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:56.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:56.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:56.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:56.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-12-27 16:02:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-12-27 16:02:56.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:56.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-12-27 16:02:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-12-27 16:02:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-12-27 16:02:57.084][self$createEntryFromContent] Accession numbers: NA, NA, NA.
biodb.DEBUG[2025-12-27 16:02:57.085][self$createEntryFromContent] Found 3 entry/ies without an accession number. Set it/them to NULL.
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:57.303][biodb::testThat]
biodb.INFO [2025-12-27 16:02:57.304][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-12-27 16:02:57.305][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:57.306][biodb::testThat]
biodb.TRACE[2025-12-27 16:02:57.310][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:57.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:57.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:57.314][ef$get] fields variable is a list.
biodb.DEBUG[2025-12-27 16:02:57.316][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:57.706][biodb::testThat]
biodb.INFO [2025-12-27 16:02:57.708][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-12-27 16:02:57.709][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:57.710][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:58.010][biodb::testThat]
biodb.INFO [2025-12-27 16:02:58.011][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-12-27 16:02:58.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:58.014][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:58.179][biodb::testThat]
biodb.INFO [2025-12-27 16:02:58.181][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-12-27 16:02:58.182][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:58.184][biodb::testThat]
biodb.INFO [2025-12-27 16:02:58.198][biodb::testThat]
biodb.INFO [2025-12-27 16:02:58.200][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-12-27 16:02:58.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:58.203][biodb::testThat]
biodb.INFO [2025-12-27 16:02:58.216][biodb::testThat]
biodb.INFO [2025-12-27 16:02:58.217][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-12-27 16:02:58.219][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:58.221][biodb::testThat]
biodb.DEBUG[2025-12-27 16:02:58.227][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-12-27 16:02:58.789][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-12-27 16:02:59.184][biodb::testThat]
biodb.INFO [2025-12-27 16:02:59.186][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-12-27 16:02:59.187][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:59.189][biodb::testThat]
biodb.TRACE[2025-12-27 16:02:59.221][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:59.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:59.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:59.226][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:59.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:59.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:59.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:59.232][ef$get] fields variable is a list.
biodb.INFO [2025-12-27 16:02:59.234][biodb::testThat]
biodb.INFO [2025-12-27 16:02:59.236][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-12-27 16:02:59.237][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:59.238][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:59.398][biodb::testThat]
biodb.INFO [2025-12-27 16:02:59.399][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-12-27 16:02:59.401][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:59.402][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:59.500][biodb::testThat]
biodb.INFO [2025-12-27 16:02:59.502][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-12-27 16:02:59.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:59.504][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:59.564][biodb::testThat]
biodb.INFO [2025-12-27 16:02:59.565][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-12-27 16:02:59.567][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:59.568][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.TRACE[2025-12-27 16:02:59.626][ef$get] Asked field names are: name.
biodb.TRACE[2025-12-27 16:02:59.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-12-27 16:02:59.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:59.629][ef$get] fields variable is a list.
biodb.TRACE[2025-12-27 16:02:59.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:59.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-12-27 16:02:59.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-12-27 16:02:59.634][ef$get] fields variable is a list.
biodb.INFO [2025-12-27 16:02:59.636][biodb::testThat]
biodb.INFO [2025-12-27 16:02:59.637][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-12-27 16:02:59.639][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:59.640][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:59.698][biodb::testThat]
biodb.INFO [2025-12-27 16:02:59.699][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-12-27 16:02:59.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-12-27 16:02:59.702][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-12-27 16:02:59.759][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-12-27 16:02:59.761][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-12-27 16:02:59.762][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-12-27 16:02:59.763][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-12-27 16:02:59.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-12-27 16:02:59.765][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-12-27 16:02:59.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-12-27 16:02:59.767][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-12-27 16:02:59.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): RT unit is defined when there is an RT value. ──
Error in `eval_bare(expr, quo_get_env(quo))`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(...)
 4.     └─testthat::quasi_label(enquo(object), label)
 5.       └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Error in `entry$getFieldValue(f)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `any(vapply(entries, is.null, FUN.VALUE = TRUE))` to be FALSE.
Differences:
`actual`:   TRUE 
`expected`: FALSE

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─testthat::expect_false(any(vapply(entries, is.null, FUN.VALUE = TRUE)))
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `e` to inherit from "character".
Actual inheritance: "NULL"
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_is(e, "BiodbEntry")
── Failure ('test_long_100_generic.R:17:1'): We can search for a compound ──────
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)

[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
Error:
! Test failures.
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
  Error in `e$hasField(mf)`: attempt to apply non-function
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  
  [ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
  Error:
  ! Test failures.
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)