R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> library(testthat)
> library(zellkonverter)
Registered S3 method overwritten by 'zellkonverter':
  method                                             from      
  py_to_r.pandas.core.arrays.categorical.Categorical reticulate
> 
> test_check("zellkonverter")
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404162035.87071
Results logged to /tmp/python-build.20260404162035.87071.log

Last 10 log lines:
/usr/bin/install -c -m 755 Modules/_posixshmem.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_posixshmem.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_multiprocessing.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ctypes.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ctypes.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses_panel.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses_panel.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_sqlite3.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_sqlite3.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ssl.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ssl.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_hashlib.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_hashlib.cpython-314-darwin.so
install: Modules/_hashlib.cpython-314-darwin.so: No such file or directory
make: *** [sharedinstall] Error 71
Saving _problems/test-cellrank_pancreas-45.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404163133.37180
Results logged to /tmp/python-build.20260404163133.37180.log

Last 10 log lines:
/usr/bin/install -c -m 755 Modules/_posixshmem.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_posixshmem.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_multiprocessing.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ctypes.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ctypes.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses_panel.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses_panel.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_sqlite3.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_sqlite3.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ssl.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ssl.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_hashlib.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_hashlib.cpython-314-darwin.so
install: Modules/_hashlib.cpython-314-darwin.so: No such file or directory
make: *** [sharedinstall] Error 71
Saving _problems/test-cellrank_pancreas-51.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404164156.86511
Results logged to /tmp/python-build.20260404164156.86511.log

Last 10 log lines:
/usr/bin/install -c -m 755 Modules/_posixshmem.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_posixshmem.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_multiprocessing.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ctypes.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ctypes.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses_panel.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses_panel.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_sqlite3.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_sqlite3.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ssl.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ssl.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_hashlib.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_hashlib.cpython-314-darwin.so
install: Modules/_hashlib.cpython-314-darwin.so: No such file or directory
make: *** [sharedinstall] Error 71
Saving _problems/test-example_anndata-21.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404165200.35800
Results logged to /tmp/python-build.20260404165200.35800.log

Last 10 log lines:
/usr/bin/install -c -m 755 Modules/_posixshmem.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_posixshmem.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_multiprocessing.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ctypes.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ctypes.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses_panel.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses_panel.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_sqlite3.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_sqlite3.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ssl.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ssl.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_hashlib.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_hashlib.cpython-314-darwin.so
install: Modules/_hashlib.cpython-314-darwin.so: No such file or directory
make: *** [sharedinstall] Error 71
Saving _problems/test-example_anndata-25.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404170201.84909
Results logged to /tmp/python-build.20260404170201.84909.log

Last 10 log lines:
/usr/bin/install -c -m 755 Modules/_posixshmem.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_posixshmem.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_multiprocessing.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ctypes.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ctypes.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses_panel.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses_panel.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_sqlite3.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_sqlite3.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ssl.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ssl.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_hashlib.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_hashlib.cpython-314-darwin.so
install: Modules/_hashlib.cpython-314-darwin.so: No such file or directory
make: *** [sharedinstall] Error 71
Saving _problems/test-gtex_8tissues-53.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404171200.34161
Results logged to /tmp/python-build.20260404171200.34161.log

Last 10 log lines:
/usr/bin/install -c -m 755 Modules/_posixshmem.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_posixshmem.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_multiprocessing.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ctypes.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ctypes.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses_panel.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses_panel.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_sqlite3.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_sqlite3.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ssl.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ssl.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_hashlib.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_hashlib.cpython-314-darwin.so
install: Modules/_hashlib.cpython-314-darwin.so: No such file or directory
make: *** [sharedinstall] Error 71
Saving _problems/test-gtex_8tissues-59.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404172158.83302
Results logged to /tmp/python-build.20260404172158.83302.log

Last 10 log lines:
/usr/bin/install -c -m 755 Modules/_posixshmem.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_posixshmem.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_multiprocessing.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ctypes.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ctypes.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_curses_panel.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_curses_panel.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_sqlite3.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_sqlite3.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_ssl.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_ssl.cpython-314-darwin.so
/usr/bin/install -c -m 755 Modules/_hashlib.cpython-314-darwin.so /Users/biocbuild/.pyenv/versions/3.14.0/lib/python3.14/lib-dynload/_hashlib.cpython-314-darwin.so
install: Modules/_hashlib.cpython-314-darwin.so: No such file or directory
make: *** [sharedinstall] Error 71
Saving _problems/test-pegasus_marrow-30.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
Installing openssl-3.6.0...
Installed openssl-3.6.0 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading readline-8.3.tar.gz...
-> https://pyenv.github.io/pythons/fe5383204467828cd495ee8d1d3c037a7eba1389c22bc6a041f627976f9061cc
Installing readline-8.3...
Installed readline-8.3 to /Users/biocbuild/.pyenv/versions/3.14.0
Downloading Python-3.14.0.tar.xz...
-> https://www.python.org/ftp/python/3.14.0/Python-3.14.0.tar.xz
Installing Python-3.14.0...
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404173205.32606
Results logged to /tmp/python-build.20260404173205.32606.log

Last 10 log lines:
checking for erf... yes
checking for erfc... yes
checking for expm1... yes
checking for log1p... yes
checking for log2... ./configure: line 2592: cannot create temp file for here document: No space left on device
mv: rename conftest.er1 to conftest.err: No space left on device
sed: conftest.c: No such file or directory
no
configure: error: Python requires C99 compatible libm
make: *** No targets specified and no makefile found.  Stop.
Saving _problems/test-pegasus_marrow-34.R
Downloading openssl-3.6.0.tar.gz...
-> https://github.com/openssl/openssl/releases/download/openssl-3.6.0/openssl-3.6.0.tar.gz
error: failed to download openssl-3.6.0.tar.gz

BUILD FAILED (OS X 12.7.6 using python-build 2.6.26-7-gce49100)

Inspect or clean up the working tree at /tmp/python-build.20260404173548.71616
Results logged to /tmp/python-build.20260404173548.71616.log

Last 10 log lines:
via: 1.1 varnish
x-served-by: cache-pdk-kfty8610085-PDK
x-cache: HIT
x-cache-hits: 0
x-timer: S1775338549.628358,VS0,VE2
vary: Accept-Encoding
x-fastly-request-id: 15cb3a1a3ea84809389ce66016414e38b0c351e4
content-length: 9379

curl: (56) Failure writing output to destination, passed 16348 returned 11184
Saving _problems/test-scIB_pancreas-15.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scIB_pancreas-19.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scanpy_pbmc3k-25.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scanpy_pbmc3k-29.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scanpy_trajectory-22.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scanpy_trajectory-26.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scvelo_pancreas-38.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scvelo_pancreas-42.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scvi_citeseq-24.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-scvi_citeseq-28.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-squidpy_visium-37.R
python-build: TMPDIR=/tmp is set to a non-accessible location
Saving _problems/test-squidpy_visium-41.R
[ FAIL 20 | WARN 16 | SKIP 0 | PASS 0 ]

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no zellkonverter_1.20.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/zellkonverter.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘zellkonverter/DESCRIPTION’ ... OK
* this is package ‘zellkonverter’ version ‘1.20.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘zellkonverter’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/zellkonverter.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Non-topic package-anchored link(s) in Rd file 'AnnData-Conversion.Rd':
  ‘[SingleCellExperiment:internals]{int_metadata}’

Non-topic package-anchored link(s) in Rd file 'AnnData-Environment.Rd':
  ‘[basilisk:basiliskOptions]{basilisk::setBasiliskShared()}’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
Warning message:
In file.rename(outfile, paste0(outfile, ".fail")) :
  cannot rename file 'testthat.Rout' to 'testthat.Rout.fail', reason 'No space left on device'
 ERROR
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/zellkonverter.Rcheck/00check.log’
for details.

* installing *source* package ‘zellkonverter’ ...
** this is package ‘zellkonverter’ version ‘1.20.1’
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (zellkonverter)