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This page was generated on 2025-03-25 13:15 -0400 (Tue, 25 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 870
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Package 16/217HostnameOS / ArchINSTALLBUILDCHECK
AnnotationHubData 1.37.2  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-03-25 12:00 -0400 (Tue, 25 Mar 2025)
git_url: https://git.bioconductor.org/packages/AnnotationHubData
git_branch: devel
git_last_commit: 92d37c8
git_last_commit_date: 2025-03-20 14:20:44 -0400 (Thu, 20 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    ERROR  

CHECK results for AnnotationHubData on teran2

To the developers/maintainers of the AnnotationHubData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AnnotationHubData
Version: 1.37.2
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:AnnotationHubData.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings AnnotationHubData_1.37.2.tar.gz
StartedAt: 2025-03-25 12:46:09 -0400 (Tue, 25 Mar 2025)
EndedAt: 2025-03-25 12:46:13 -0400 (Tue, 25 Mar 2025)
EllapsedTime: 3.3 seconds
RetCode: 1
Status:   ERROR  
CheckDir: AnnotationHubData.Rcheck
Warnings: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:AnnotationHubData.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings AnnotationHubData_1.37.2.tar.gz
###
##############################################################################
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/AnnotationHubData.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘AnnotationHubData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AnnotationHubData’ version ‘1.37.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://bioconductor.org/packages/3.20/bioc/src/contrib:
  download from 'https://bioconductor.org/packages/3.20/bioc/src/contrib/PACKAGES' failed
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/src/contrib:
  download from 'https://bioconductor.org/packages/3.20/data/annotation/src/contrib/PACKAGES' failed
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/src/contrib:
  download from 'https://bioconductor.org/packages/3.20/data/experiment/src/contrib/PACKAGES' failed
Error in readRDS(tfo) : error reading from connection
Execution halted

Installation output


Tests output


Example timings