Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2025-03-24 12:36 -0400 (Mon, 24 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 870 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 29/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
BiocFileCache 2.15.1 (landing page) Lori Shepherd
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
To the developers/maintainers of the BiocFileCache package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BiocFileCache |
Version: 2.15.1 |
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocFileCache |
StartedAt: 2025-03-24 12:16:39 -0400 (Mon, 24 Mar 2025) |
EndedAt: 2025-03-24 12:17:15 -0400 (Mon, 24 Mar 2025) |
EllapsedTime: 36.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocFileCache ### ############################################################################## ############################################################################## * checking for file ‘BiocFileCache/DESCRIPTION’ ... OK * preparing ‘BiocFileCache’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocFileCache.Rmd’ using rmarkdown pandoc: /tmp/RtmpCaJywX/Rbuild2272142528104a/BiocFileCache/vignettes/BiocFileCache.html: hClose: resource exhausted (No space left on device) Error: processing vignette 'BiocFileCache.Rmd' failed with diagnostics: pandoc document conversion failed with error 1 --- failed re-building ‘BiocFileCache.Rmd’ --- re-building ‘BiocFileCache_Troubleshooting.Rmd’ using rmarkdown Warning in close.connection(con) : Problem closing connection: No space left on device Warning in close.connection(con) : Problem closing connection: No space left on device Warning in close.connection(con) : Problem closing connection: No space left on device Quitting from BiocFileCache_Troubleshooting.Rmd:54-57 [create] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'conn' in selecting a method for function 'dbDisconnect': object 'info' not found --- Backtrace: ▆ 1. ├─BiocFileCache::BiocFileCache(path, ask = FALSE) 2. │ └─BiocFileCache:::.sql_create_db(bfc) 3. │ ├─base::tryCatch(...) 4. │ └─BiocFileCache:::.sql_disconnect(info) 5. │ └─DBI::dbDisconnect(info$con) 6. └─base::.handleSimpleError(`<fn>`, "object 'info' not found", base::quote(.sql_create_db(bfc))) 7. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BiocFileCache_Troubleshooting.Rmd' failed with diagnostics: error in evaluating the argument 'conn' in selecting a method for function 'dbDisconnect': object 'info' not found --- failed re-building ‘BiocFileCache_Troubleshooting.Rmd’ --- re-building ‘BiocFileCache_UseCases.Rmd’ using rmarkdown Warning in close.connection(con) : Problem closing connection: No space left on device Quitting from BiocFileCache_UseCases.Rmd:191-221 [ensemblremote] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! database or disk is full --- Backtrace: ▆ 1. ├─BiocFileCache::bfcrpath(bfc, c(url, url2)) 2. └─BiocFileCache::bfcrpath(bfc, c(url, url2)) 3. ├─BiocFileCache::bfcremove(x, rmdx) 4. └─BiocFileCache::bfcremove(x, rmdx) 5. └─BiocFileCache:::.sql_remove_resource(x, rids) 6. └─BiocFileCache:::.sql_db_execute(bfc, cmd) 7. ├─DBI::dbExecute(con, sql, params = param) 8. └─DBI::dbExecute(con, sql, params = param) 9. ├─DBI::dbSendStatement(conn, statement, ...) 10. └─DBI::dbSendStatement(conn, statement, ...) 11. ├─DBI::dbSendQuery(conn, statement, ...) 12. └─RSQLite::dbSendQuery(conn, statement, ...) 13. └─RSQLite (local) .local(conn, statement, ...) 14. ├─methods::new(...) 15. │ ├─methods::initialize(value, ...) 16. │ └─methods::initialize(value, ...) 17. └─RSQLite:::result_create(conn@ptr, statement) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BiocFileCache_UseCases.Rmd' failed with diagnostics: database or disk is full --- failed re-building ‘BiocFileCache_UseCases.Rmd’ SUMMARY: processing the following files failed: ‘BiocFileCache.Rmd’ ‘BiocFileCache_Troubleshooting.Rmd’ ‘BiocFileCache_UseCases.Rmd’ Error: Vignette re-building failed. Execution halted