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This page was generated on 2025-03-23 12:12 -0400 (Sun, 23 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 41/217HostnameOS / ArchINSTALLBUILDCHECK
Biostrings 2.75.4  (landing page)
Hervé Pagès
Snapshot Date: 2025-03-23 12:00 -0400 (Sun, 23 Mar 2025)
git_url: https://git.bioconductor.org/packages/Biostrings
git_branch: devel
git_last_commit: d6f21ed
git_last_commit_date: 2025-02-20 19:31:45 -0400 (Thu, 20 Feb 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for Biostrings on teran2

To the developers/maintainers of the Biostrings package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Biostrings
Version: 2.75.4
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Biostrings
StartedAt: 2025-03-23 12:09:59 -0400 (Sun, 23 Mar 2025)
EndedAt: 2025-03-23 12:10:00 -0400 (Sun, 23 Mar 2025)
EllapsedTime: 1.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Biostrings
###
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* checking for file ‘Biostrings/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/PDict-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/QualityScaledXStringSet.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/SparseList-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XString-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XStringCodec-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XStringQuality-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XStringSet-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XStringSet-comparison.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XStringSet-io.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XStringSetList-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/XStringViews-class.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/chartr.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/dinucleotideFrequencyTest.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/findPalindromes.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/getSeq.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/injectHardMask.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/letter.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/letterFrequency.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/lowlevel-matching.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/maskMotif.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/match-utils.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/matchLRPatterns.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/matchPDict.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/matchPWM.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/matchPattern.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/matchProbePair.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/matchprobes.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/misc.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/needwunsQS.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/padAndClip.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/pmatchPattern.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/replaceAt.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/replaceLetterAt.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/reverseComplement.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/seqinfo-methods.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/seqtype.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/strsplit-methods.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/translate.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/trimLRPatterns.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/utils.R': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/R/xscat.R': No space left on device
cp: cannot create directory '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/data': No space left on device
cp: cannot create directory '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/inst': No space left on device
cp: cannot create directory '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/legacy': No space left on device
cp: cannot create directory '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/man': No space left on device
cp: cannot create directory '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/src': No space left on device
cp: cannot create directory '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/tests': No space left on device
cp: cannot create directory '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/vignettes': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/.Rbuildignore': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/.gitignore': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/NEWS': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/README.md': No space left on device
cp: error writing '/tmp/RtmpmXo9dS/Rbuild1c05bd78e54d27/Biostrings/TODO': No space left on device
 ERROR
copying to build directory failed