Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours - BUILD results for EnrichedHeatmap on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	870
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BUILD results for EnrichedHeatmap on teran2

To the developers/maintainers of the EnrichedHeatmap package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: EnrichedHeatmap

Version: 1.37.0

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichedHeatmap

StartedAt: 2025-03-25 12:32:51 -0400 (Tue, 25 Mar 2025)

EndedAt: 2025-03-25 12:34:42 -0400 (Tue, 25 Mar 2025)

EllapsedTime: 110.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichedHeatmap
###
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* checking for file ‘EnrichedHeatmap/DESCRIPTION’ ... OK
* preparing ‘EnrichedHeatmap’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EnrichedHeatmap.Rmd’ using rmarkdown
--- finished re-building ‘EnrichedHeatmap.Rmd’

--- re-building ‘roadmap.Rmd’ using rmarkdown
trying URL 'https://jokergoo.github.io/supplementary/EnrichedHeatmap-supplementary/roadmap_normalized_matrices.RData'
Content type 'application/octet-stream' length 26598186 bytes (25.4 MB)
=============================
downloaded 15.2 MB

Warning in close.connection(con) :
  Problem closing connection:  No space left on device

Quitting from roadmap.Rmd:43-53 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! download from 'https://jokergoo.github.io/supplementary/EnrichedHeatmap-supplementary/roadmap_normalized_matrices.RData' failed
---
Backtrace:
    ▆
 1. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'roadmap.Rmd' failed with diagnostics:
download from 'https://jokergoo.github.io/supplementary/EnrichedHeatmap-supplementary/roadmap_normalized_matrices.RData' failed
--- failed re-building ‘roadmap.Rmd’

--- re-building ‘row_odering.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device

Quitting from row_odering.Rmd:91-113 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! R: Read Exception `/tmp/RtmpHsN0xZ/.heatmap_body_cf6611af5d001de42e0244c52e72cb07_1_1213c1172c6c31b.png' @ error/png.c/MagickPNGErrorHandler/1643
---
Backtrace:
     ▆
  1. ├─grid::grid.grabExpr(...)
  2. │ └─base::eval(expr)
  3. ├─ComplexHeatmap::draw(...)
  4. └─ComplexHeatmap::draw(...)
  5.   └─ComplexHeatmap (local) .local(object, ...)
  6.     ├─ComplexHeatmap::draw(ht_list, ...)
  7.     └─ComplexHeatmap::draw(ht_list, ...)
  8.       └─ComplexHeatmap (local) .local(object, ...)
  9.         ├─base::eval(code)
 10.         │ └─base::eval(code)
 11.         └─ht_graphic_fun_list[[j]](object)
 12.           ├─ComplexHeatmap::draw_heatmap_list(object)
 13.           └─ComplexHeatmap::draw_heatmap_list(object)
 14.             └─ComplexHeatmap (local) .local(object, ...)
 15.               ├─ComplexHeatmap::draw(ht, internal = TRUE)
 16.               └─ComplexHeatmap::draw(ht, internal = TRUE)
 17.                 └─ComplexHeatmap (local) .local(object, ...)
 18.                   └─ht_graphic_fun_list[[j]](object)
 19.                     ├─ComplexHeatmap::draw_heatmap_body(...)
 20.                     └─ComplexHeatmap::draw_heatmap_body(...)
 21.                       └─ComplexHeatmap (local) .local(object, ...)
 22.                         └─magick::image_read(temp_image)
 23.                           ├─base::withCallingHandlers(...)
 24.                           └─magick:::magick_image_readpath(path, density, depth, strip, defines)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'row_odering.Rmd' failed with diagnostics:
R: Read Exception `/tmp/RtmpHsN0xZ/.heatmap_body_cf6611af5d001de42e0244c52e72cb07_1_1213c1172c6c31b.png' @ error/png.c/MagickPNGErrorHandler/1643
--- failed re-building ‘row_odering.Rmd’

--- re-building ‘visualize_categorical_signals_wrapper.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on deSUMMARY: processing the following files failed:
  ‘roadmap.Rmd’ ‘row_odering.Rmd’ ‘visualize_categorical_signals_wrapper.Rmd’

Error: Vignette re-building failed.
Execution halted