Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	869
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BUILD results for HubPub on teran2

To the developers/maintainers of the HubPub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: HubPub

Version: 1.15.4

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HubPub

StartedAt: 2025-03-23 12:10:47 -0400 (Sun, 23 Mar 2025)

EndedAt: 2025-03-23 12:10:56 -0400 (Sun, 23 Mar 2025)

EllapsedTime: 8.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HubPub
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* checking for file ‘HubPub/DESCRIPTION’ ... OK
* preparing ‘HubPub’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CreateAHubPackage.Rmd’ using rmarkdown
pandoc: /tmp/RtmpUvVUJu/Rbuild1c158f5229583/HubPub/vignettes/CreateAHubPackage.html: hClose: resource exhausted (No space left on device)
Error: processing vignette 'CreateAHubPackage.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘CreateAHubPackage.Rmd’

--- re-building ‘HubPub.Rmd’ using rmarkdown

Quitting from HubPub.Rmd:69-72 [create]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find_package_root()`:
! Could not find R package in `/tmp/RtmpeMvAMb/examplePkg` or its parent directories.
---
Backtrace:
     ▆
  1. └─HubPub::create_pkg(file.path(fl, "examplePkg"), "ExperimentHub")
  2.   └─usethis::use_testthat()
  3.     └─usethis:::use_testthat_impl(edition, parallel = parallel)
  4.       └─usethis:::proj_desc()
  5.         └─desc::desc(file = path)
  6.           └─description$new(cmd, file, text, package)
  7.             └─desc (local) initialize(...)
  8.               └─desc:::idesc_create(self, private, cmd, file, text, package)
  9.                 └─desc:::idesc_create_file(self, private, file)
 10.                   └─desc:::find_description(file)
 11.                     └─desc:::find_package_root(dir)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HubPub.Rmd' failed with diagnostics:
Could not find R package in `/tmp/RtmpeMvAMb/examplePkg` or its parent directories.
--- failed re-building ‘HubPub.Rmd’

SUMMARY: processing the following files failed:
  ‘CreateAHubPackage.Rmd’ ‘HubPub.Rmd’

Error: Vignette re-building failed.
Execution halted