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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL Rdisop
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘Rdisop’ ...
** this is package ‘Rdisop’ version ‘1.67.5’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rcpp/include' -I/usr/local/include   -I./imslib/src/ -fpic  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c disop.cpp -o disop.o
In file included from ./imslib/src/ims/alphabet.h:8,
                 from disop.cpp:18:
./imslib/src/ims/element.h: In member function ‘ims::Element::mass_type ims::Element::getMass(size_type) const’:
./imslib/src/ims/element.h:166:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ims::IsotopeDistribution::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  166 |                     for (int i=0; i < IsotopeDistribution::SIZE; i++) {
      |                                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from disop.cpp:28:
./imslib/src/ims/decomp/decomputils.h: In function ‘std::pair<typename DecompositionWeights::alphabet_mass_type, typename DecompositionWeights::alphabet_mass_type> ims::DecompUtils::getMinMaxWeightsRoundingErrors(const DecompositionWeights&)’:
./imslib/src/ims/decomp/decomputils.h:92:60: warning: typedef ‘weight_type’ locally defined but not used [-Wunused-local-typedefs]
   92 |         typedef typename DecompositionWeights::weight_type weight_type;
      |                                                            ^~~~~~~~~~~
disop.cpp: In function ‘bool isValidMyNitrogenRule(const ims::ComposedElement&, int)’:
disop.cpp:106:8: warning: unused variable ‘parityeven’ [-Wunused-variable]
  106 |   bool parityeven = !parityodd;
      |        ^~~~~~~~~~
disop.cpp: In function ‘SEXPREC* decomposeIsotopes(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
disop.cpp:229:50: warning: comparison of integer expressions of different signedness: ‘std::vector<ims::IsotopeDistribution::Peak>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  229 |         for (peaks_container::size_type i = 0; i < abundances.size(); ++i) {
      |                                                ~~^~~~~~~~~~~~~~~~~~~
disop.cpp:232:50: warning: comparison of integer expressions of different signedness: ‘std::vector<ims::IsotopeDistribution::Peak>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  232 |         for (peaks_container::size_type i = 0; i < abundances.size(); ++i) {
      |                                                ~~^~~~~~~~~~~~~~~~~~~
disop.cpp:240:53: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  240 |         for (masses_container::size_type mi = 0; mi < masses.size() && mi < abundances.size(); ++mi) {
      |                                                  ~~~^~~~~~~~~~~~~~~
disop.cpp:240:75: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  240 |         for (masses_container::size_type mi = 0; mi < masses.size() && mi < abundances.size(); ++mi) {
      |                                                                        ~~~^~~~~~~~~~~~~~~~~~~
disop.cpp:192:13: warning: unused variable ‘number_molecules_shown’ [-Wunused-variable]
  192 |         int number_molecules_shown = 100;
      |             ^~~~~~~~~~~~~~~~~~~~~~
disop.cpp:170:39: warning: typedef ‘mass_type’ locally defined but not used [-Wunused-local-typedefs]
  170 |     typedef distribution_t::mass_type mass_type;
      |                                       ^~~~~~~~~
disop.cpp:172:47: warning: typedef ‘nominal_mass_type’ locally defined but not used [-Wunused-local-typedefs]
  172 |     typedef distribution_t::nominal_mass_type nominal_mass_type;
      |                                               ^~~~~~~~~~~~~~~~~
disop.cpp:175:42: warning: typedef ‘decomposition_type’ locally defined but not used [-Wunused-local-typedefs]
  175 |     typedef decompositions_t::value_type decomposition_type;
      |                                          ^~~~~~~~~~~~~~~~~~
disop.cpp: In function ‘SEXPREC* calculateScore(SEXP, SEXP, SEXP, SEXP)’:
disop.cpp:391:53: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  391 |         for (masses_container::size_type mi = 0; mi < masses.size() && mi < abundances.size(); ++mi)
      |                                                  ~~~^~~~~~~~~~~~~~~
disop.cpp:391:75: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  391 |         for (masses_container::size_type mi = 0; mi < masses.size() && mi < abundances.size(); ++mi)
      |                                                                        ~~~^~~~~~~~~~~~~~~~~~~
disop.cpp:408:50: warning: comparison of integer expressions of different signedness: ‘std::vector<ims::IsotopeDistribution::Peak>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  408 |         for (peaks_container::size_type i = 0; i < abundances.size(); ++i) {
      |                                                ~~^~~~~~~~~~~~~~~~~~~
disop.cpp:411:50: warning: comparison of integer expressions of different signedness: ‘std::vector<ims::IsotopeDistribution::Peak>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  411 |         for (peaks_container::size_type i = 0; i < abundances.size(); ++i) {
      |                                                ~~^~~~~~~~~~~~~~~~~~~
disop.cpp:415:53: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  415 |         for (masses_container::size_type mi = 0; mi < masses.size() && mi < abundances.size(); ++mi)
      |                                                  ~~~^~~~~~~~~~~~~~~
disop.cpp:415:75: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  415 |         for (masses_container::size_type mi = 0; mi < masses.size() && mi < abundances.size(); ++mi)
      |                                                                        ~~~^~~~~~~~~~~~~~~~~~~
disop.cpp:378:43: warning: typedef ‘mass_type’ locally defined but not used [-Wunused-local-typedefs]
  378 |         typedef distribution_t::mass_type mass_type;
      |                                           ^~~~~~~~~
disop.cpp: In function ‘SEXPREC* rlistScores(std::multimap<score_type, ims::ComposedElement, std::greater<score_type> >, int)’:
disop.cpp:627:43: warning: typedef ‘scorer_type’ locally defined but not used [-Wunused-local-typedefs]
  627 |     typedef DistributionProbabilityScorer scorer_type;
      |                                           ^~~~~~~~~~~
disop.cpp: In function ‘void initializeCHNOPS(alphabet_t&, int)’:
disop.cpp:710:39: warning: typedef ‘elements_type’ locally defined but not used [-Wunused-local-typedefs]
  710 |         typedef alphabet_t::container elements_type;
      |                                       ^~~~~~~~~~~~~
disop.cpp: In function ‘void initializeAlphabet(SEXP, alphabet_t&, int)’:
disop.cpp:815:33: warning: typedef ‘elements_type’ locally defined but not used [-Wunused-local-typedefs]
  815 |   typedef alphabet_t::container elements_type;
      |                                 ^~~~~~~~~~~~~
disop.cpp: At global scope:
disop.cpp:875:1: fatal error: error writing to /tmp/ccJ6maSP.s: No space left on device
  875 | }
      | ^
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.21-bioc-rapid/R/etc/Makeconf:202: disop.o] Error 1
ERROR: compilation failed for package ‘Rdisop’
* removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rdisop’
* restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rdisop’