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This page was generated on 2025-03-24 12:36 -0400 (Mon, 24 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 870
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Package 203/217HostnameOS / ArchINSTALLBUILDCHECK
TCGAbiolinks 2.35.3  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2025-03-24 12:00 -0400 (Mon, 24 Mar 2025)
git_url: https://git.bioconductor.org/packages/TCGAbiolinks
git_branch: devel
git_last_commit: 40752356
git_last_commit_date: 2025-02-17 17:42:36 -0400 (Mon, 17 Feb 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for TCGAbiolinks on teran2

To the developers/maintainers of the TCGAbiolinks package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TCGAbiolinks
Version: 2.35.3
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
StartedAt: 2025-03-24 12:29:06 -0400 (Mon, 24 Mar 2025)
EndedAt: 2025-03-24 12:29:07 -0400 (Mon, 24 Mar 2025)
EllapsedTime: 1.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
###
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* checking for file ‘TCGAbiolinks/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/dataBRCA.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/dataDEGsFiltLevel.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/dataREAD.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/dataREAD_df.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/datalist': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/gbm.exp.harmonized.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/gbm.exp.legacy.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/geneInfo.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/geneInfoHT.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/met.gbm.27k.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/msi_results.rda': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/data/tabSurvKMcompleteDEGs.rda': No space left on device
cp: cannot create directory '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/inst': No space left on device
cp: cannot create directory '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/man': No space left on device
cp: cannot create directory '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/tests': No space left on device
cp: cannot create directory '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/vignettes': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/.Rapp.history': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/.Rbuildignore': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/.gitignore': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/.travis.yml': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/NAMESPACE': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/NEWS': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/README.md': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/TCGAbiolinks.Rproj': No space left on device
cp: error writing '/tmp/RtmpBFlyUi/Rbuild22d74674c6dafc/TCGAbiolinks/appveyor.yml': No space left on device
 ERROR
copying to build directory failed