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This page was generated on 2025-03-23 12:12 -0400 (Sun, 23 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 209/217HostnameOS / ArchINSTALLBUILDCHECK
UCSC.utils 1.3.1  (landing page)
Hervé Pagès
Snapshot Date: 2025-03-23 12:00 -0400 (Sun, 23 Mar 2025)
git_url: https://git.bioconductor.org/packages/UCSC.utils
git_branch: devel
git_last_commit: 6e85249
git_last_commit_date: 2025-01-15 13:34:58 -0400 (Wed, 15 Jan 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for UCSC.utils on teran2

To the developers/maintainers of the UCSC.utils package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: UCSC.utils
Version: 1.3.1
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils
StartedAt: 2025-03-23 12:11:33 -0400 (Sun, 23 Mar 2025)
EndedAt: 2025-03-23 12:11:40 -0400 (Sun, 23 Mar 2025)
EllapsedTime: 7.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils
###
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* checking for file ‘UCSC.utils/DESCRIPTION’ ... OK
* preparing ‘UCSC.utils’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UCSC.utils.Rmd’ using rmarkdown

Quitting from UCSC.utils.Rmd:75-78 [fetch_UCSC_track_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.check_response_status()`:
! [HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or
  https://api.genome.ucsc.edu is down?)
---
Backtrace:
    ▆
 1. └─UCSC.utils::fetch_UCSC_track_data("mm9", "cytoBandIdeo")
 2.   └─UCSC.utils:::API_get_track_data(genome, primary_table, api.url = api.url)
 3.     └─UCSC.utils:::.query_API(...)
 4.       └─UCSC.utils:::.check_response_status(response, fallback_errmsg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'UCSC.utils.Rmd' failed with diagnostics:
[HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or
  https://api.genome.ucsc.edu is down?)
--- failed re-building ‘UCSC.utils.Rmd’

SUMMARY: processing the following file failed:
  ‘UCSC.utils.Rmd’

Error: Vignette re-building failed.
Execution halted