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This page was generated on 2025-03-25 13:15 -0400 (Tue, 25 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 870
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Package 210/217HostnameOS / ArchINSTALLBUILDCHECK
VariantAnnotation 1.53.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-03-25 12:00 -0400 (Tue, 25 Mar 2025)
git_url: https://git.bioconductor.org/packages/VariantAnnotation
git_branch: devel
git_last_commit: 6f599d0
git_last_commit_date: 2025-01-07 13:26:04 -0400 (Tue, 07 Jan 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for VariantAnnotation on teran2

To the developers/maintainers of the VariantAnnotation package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: VariantAnnotation
Version: 1.53.1
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data VariantAnnotation
StartedAt: 2025-03-25 12:43:31 -0400 (Tue, 25 Mar 2025)
EndedAt: 2025-03-25 12:43:32 -0400 (Tue, 25 Mar 2025)
EllapsedTime: 0.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data VariantAnnotation
###
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* checking for file ‘VariantAnnotation/DESCRIPTION’ ... OK
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-SIFTDb-class.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-ScanVcfParam-class.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-VCF-class.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-VCFHeader-class.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-VRanges-class.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-VRangesList-class.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-VariantType-class.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-VcfFile.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-expand.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-filterVcf.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-genotypeToSnpMatrix.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-import.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-locateVariants.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-predictCoding.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-readVcf.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-scanVcf.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-scanVcfHeader.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-snpSummary.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-summarizeVariants.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/methods-writeVcf.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/test_VariantAnnotation_package.R': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/R/use_vep_api.R': No space left on device
cp: cannot create directory '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/inst': No space left on device
cp: cannot create directory '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/man': No space left on device
cp: cannot create directory '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/src': No space left on device
cp: cannot create directory '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/tests': No space left on device
cp: cannot create directory '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/vignettes': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/.gitignore': No space left on device
cp: error writing '/tmp/Rtmp34m6d6/Rbuild2199f915e4143b/VariantAnnotation/NEWS': No space left on device
 ERROR
copying to build directory failed