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This page was generated on 2025-03-23 12:12 -0400 (Sun, 23 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 21/217HostnameOS / ArchINSTALLBUILDCHECK
basilisk 1.19.3  (landing page)
Aaron Lun
Snapshot Date: 2025-03-23 12:00 -0400 (Sun, 23 Mar 2025)
git_url: https://git.bioconductor.org/packages/basilisk
git_branch: devel
git_last_commit: 2732c8b
git_last_commit_date: 2025-03-20 16:00:11 -0400 (Thu, 20 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for basilisk on teran2

To the developers/maintainers of the basilisk package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: basilisk
Version: 1.19.3
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data basilisk
StartedAt: 2025-03-23 12:09:37 -0400 (Sun, 23 Mar 2025)
EndedAt: 2025-03-23 12:09:44 -0400 (Sun, 23 Mar 2025)
EllapsedTime: 7.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data basilisk
###
##############################################################################
##############################################################################


* checking for file ‘basilisk/DESCRIPTION’ ... OK
* preparing ‘basilisk’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘motivation.Rmd’ using rmarkdown
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... failed

NoSpaceLeftError: No space left on devices.


Quitting from motivation.Rmd:279-284 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error creating conda environment '/tmp/Rtmp0JcuHU/Rbuild1bffbdf253afe/basilisk/vignettes/basilisk-vignette-test/1.19.3' [exit code 1]
---
Backtrace:
    ▆
 1. └─basilisk::createLocalBasiliskEnv(...)
 2.   └─basilisk::setupBasiliskEnv(envpath, ...)
 3.     └─reticulate::conda_install(...)
 4.       └─reticulate::conda_create(...)
 5.         └─reticulate:::stopf(fmt, envname, result, call. = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'motivation.Rmd' failed with diagnostics:
Error creating conda environment '/tmp/Rtmp0JcuHU/Rbuild1bffbdf253afe/basilisk/vignettes/basilisk-vignette-test/1.19.3' [exit code 1]
--- failed re-building ‘motivation.Rmd’

SUMMARY: processing the following file failed:
  ‘motivation.Rmd’

Error: Vignette re-building failed.
Execution halted