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This page was generated on 2025-03-22 12:13 -0400 (Sat, 22 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 81/217HostnameOS / ArchINSTALLBUILDCHECK
fgsea 1.33.4  (landing page)
Alexey Sergushichev
Snapshot Date: 2025-03-22 12:00 -0400 (Sat, 22 Mar 2025)
git_url: https://git.bioconductor.org/packages/fgsea
git_branch: devel
git_last_commit: 237247f
git_last_commit_date: 2025-03-19 19:17:02 -0400 (Wed, 19 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for fgsea on teran2

To the developers/maintainers of the fgsea package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fgsea
Version: 1.33.4
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data fgsea
StartedAt: 2025-03-22 12:09:46 -0400 (Sat, 22 Mar 2025)
EndedAt: 2025-03-22 12:09:48 -0400 (Sat, 22 Mar 2025)
EllapsedTime: 1.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data fgsea
###
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* checking for file ‘fgsea/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/extdata/GDS289.tsv': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/extdata/fgsea_res.tsv': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/extdata/gse14308_expression_matrix.tsv': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/extdata/mouse.reactome.gmt': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/extdata/naive.vs.th1.rnk': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/extdata/pathway.txt': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/CITATION': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/gen_gene_ranks.R': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/gen_gse14308_expression_matrix.R': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/gene_reactome_pathways.R': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/gse19429_gsea.R': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/run_broad_gsea.R': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/inst/th1_gsea.R': No space left on device
cp: cannot create directory '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/man': No space left on device
cp: cannot create directory '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/src': No space left on device
cp: cannot create directory '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/tests': No space left on device
cp: cannot create directory '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/vignettes': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/.Rbuildignore': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/.gitattributes': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/.gitignore': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/LICENCE': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/NAMESPACE': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/README.md': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/fgsea.Rproj': No space left on device
cp: error writing '/tmp/RtmpVTZJm6/Rbuild1049f866b27a51/fgsea/test.R': No space left on device
 ERROR
copying to build directory failed