Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	870
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BUILD results for graph on teran2

To the developers/maintainers of the graph package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graph

Version: 1.85.3

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data graph

StartedAt: 2025-03-24 12:22:55 -0400 (Mon, 24 Mar 2025)

EndedAt: 2025-03-24 12:22:57 -0400 (Mon, 24 Mar 2025)

EllapsedTime: 2.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data graph
###
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* checking for file ‘graph/DESCRIPTION’ ... OK
* preparing ‘graph’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘graph’ ...
** this is package ‘graph’ version ‘1.85.3’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c graph.c -o graph.o
gcc -shared -L/usr/local/lib -o graph.so graph.o
mv graph.so BioC_graph.so
installing to /tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/libs
** R
** data
** inst
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/R/class.R', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/R/graphH.R', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/R/property.R', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/R/ruuid-based.R', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/asGraphProperty.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/gEdge-class.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/gNode-class.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/generalGraph-class.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/graphH-class.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/graphID-class.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/hashtable-class.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/hashtable.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/old/man/propertyHolder-class.Rd', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/perf/Makefile', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/perf/bgt.R', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/perf/graphperf.Rnw', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/perf/multigraphs.Rnw', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/unitTests/MultiGraph_test.R', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/unitTests/attrData_test.R', reason 'No such file or directory'
Warning in file.create(to[okay]) :
  cannot create file '/tmp/RtmpZoWSNt/Rinst22ab46496f820a/00LOCK-graph/00new/graph/unitTests/clusterGraph_test.R', reason 'No such file or directory'
Warning in file
      -----------------------------------
ERROR: package installation failed