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This page was generated on 2025-03-24 12:36 -0400 (Mon, 24 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 870
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Package 114/217HostnameOS / ArchINSTALLBUILDCHECK
hpar 1.49.0  (landing page)
Laurent Gatto
Snapshot Date: 2025-03-24 12:00 -0400 (Mon, 24 Mar 2025)
git_url: https://git.bioconductor.org/packages/hpar
git_branch: devel
git_last_commit: 1c9e5d1
git_last_commit_date: 2024-10-29 09:42:35 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for hpar on teran2

To the developers/maintainers of the hpar package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: hpar
Version: 1.49.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data hpar
StartedAt: 2025-03-24 12:23:10 -0400 (Mon, 24 Mar 2025)
EndedAt: 2025-03-24 12:23:34 -0400 (Mon, 24 Mar 2025)
EllapsedTime: 24.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data hpar
###
##############################################################################
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* checking for file ‘hpar/DESCRIPTION’ ... OK
* preparing ‘hpar’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘hpar.Rmd’ using rmarkdown

Quitting from hpar.Rmd:320-329 [uc-db]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! database or disk is full
---
Backtrace:
     ▆
  1. ├─AnnotationDbi::select(...)
  2. └─AnnotationDbi::select(...)
  3.   └─AnnotationDbi:::.select(...)
  4.     └─AnnotationDbi:::.legacySelect(x, keys, cols, keytype, jointype)
  5.       └─AnnotationDbi:::.extractData(...)
  6.         └─AnnotationDbi:::dbQuery(dbconn(x), sql)
  7.           ├─DBI::dbGetQuery(conn, SQL)
  8.           └─DBI::dbGetQuery(conn, SQL)
  9.             └─DBI (local) .local(conn, statement, ...)
 10.               ├─DBI::dbSendQuery(conn, statement, ...)
 11.               └─RSQLite::dbSendQuery(conn, statement, ...)
 12.                 └─RSQLite (local) .local(conn, statement, ...)
 13.                   ├─methods::new(...)
 14.                   │ ├─methods::initialize(value, ...)
 15.                   │ └─methods::initialize(value, ...)
 16.                   └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hpar.Rmd' failed with diagnostics:
database or disk is full
--- failed re-building ‘hpar.Rmd’

SUMMARY: processing the following file failed:
  ‘hpar.Rmd’

Error: Vignette re-building failed.
Execution halted