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###
### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL lpsymphony
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘lpsymphony’ ...
** this is package ‘lpsymphony’ version ‘1.35.0’
** using staged installation
Running on Linux
CXX is g++ -std=gnu++17
CXX is g++ -std=gnu++14
checking build system type... x86_64-pc-linux-gnu
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2  
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2  
configure: Trying to determine Fortran compiler name
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++ -std=gnu++17... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking host system type... x86_64-pc-linux-gnu
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... g++ -std=gnu++17 -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++ -std=gnu++17... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ -std=gnu++17 option to produce PIC... -fPIC
checking if g++ -std=gnu++17 PIC flag -fPIC works... yes
checking if g++ -std=gnu++17 static flag -static works... yes
checking if g++ -std=gnu++17 supports -c -o file.o... yes
checking whether the g++ -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: Build is "x86_64-pc-linux-gnu".
checking if library version is set... no
checking whether source of project Blas is available and should be compiled... no, source file ./ThirdParty/Blas/daxpy.f not available
checking whether source of project Lapack is available and should be compiled... no, source file ./ThirdParty/Lapack/LAPACK/SRC/dlarf.f not available
checking whether source of project Glpk is available and should be compiled... no, source file ./ThirdParty/Glpk/glpk/src/glplpx01.c not available
checking whether source of project Sample is available and should be compiled... no
checking whether source of project miblib3 is available and should be compiled... no
checking whether source of project CoinUtils is available and should be compiled... yes, source in CoinUtils
checking whether source of project Osi is available and should be compiled... yes, source in Osi
checking whether source of project Clp is available and should be compiled... yes, source in Clp
checking whether source of project Cgl is available and should be compiled... yes, source in Cgl
checking whether source of project DyLP is available and should be compiled... no
checking whether source of project Vol is available and should be compiled... no
checking whether source of project SYMPHONY is available and should be compiled... yes, source in SYMPHONY
checking whether Clp is required... yes
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
configure: configuring in CoinUtils
configure: running /bin/bash './configure' --prefix=/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' 'CXX=g++ -std=gnu++17' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' 'CPPFLAGS=-I/usr/local/include' 'LDFLAGS=-L/usr/local/lib' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-pc-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCOINUTILS_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2   -DCOINUTILS_BUILD
configure: Trying to determine Fortran compiler name
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++ -std=gnu++17... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:6:10
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether isfinite is declared... no
checking whether finite is declared... yes
checking for cmath... (cached) yes
checking for cfloat... (cached) yes
checking for cieeefp... (cached) no
checking for ieeefp.h... (cached) no
checking whether isnan is declared... no
checking whether std::isnan(42.42) is declared... yes
checking cinttypes usability... yes
checking cinttypes presence... yes
checking for cinttypes... yes
checking cstdint usability... yes
checking cstdint presence... yes
checking for cstdint... yes
checking for int64_t... yes
checking for intptr_t... yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking whether -lblas has BLAS... yes: -lblas
checking whether LAPACK is already available with BLAS library... no
checking whether -llapack has LAPACK... yes: -llapack
checking for COIN-OR package Glpk... not given: Package 'coinglpk', required by 'virtual:world', not found
checking for COIN-OR package Sample... not given: Package 'coindatasample', required by 'virtual:world', not found
checking for COIN-OR package Netlib... not given: Package 'coindatanetlib', required by 'virtual:world', not found
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating coinutils.pc
config.status: creating coinutils-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_coinutils.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of CoinUtils successful
configure: configuring in Osi
configure: running /bin/bash './configure' --prefix=/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' 'CXX=g++ -std=gnu++17' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' 'CPPFLAGS=-I/usr/local/include' 'LDFLAGS=-L/usr/local/lib' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-pc-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DOSI_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2   -DOSI_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++ -std=gnu++17... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:4:12
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Glpk... not given: Package 'coinglpk', required by 'virtual:world', not found
checking for COIN-OR package SoPlex... not given: Package 'coinsoplex', required by 'virtual:world', not found
checking for COIN-OR package Sample... not given: Package 'coindatasample', required by 'virtual:world', not found
checking for COIN-OR package Netlib... not given: Package 'coindatanetlib', required by 'virtual:world', not found
checking if user provides library for Cplex... no
checking if user provides library for Mosek... no
checking if user provides library for Xpress... no
checking if user provides library for Gurobi... no
configure: WARNING: No solver available, examples will not work.
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Osi/Makefile
config.status: creating src/OsiCpx/Makefile
config.status: creating src/OsiGlpk/Makefile
config.status: creating src/OsiMsk/Makefile
config.status: creating src/OsiXpr/Makefile
config.status: creating src/OsiGrb/Makefile
config.status: creating src/OsiSpx/Makefile
config.status: creating src/OsiCommonTest/Makefile
config.status: creating test/Makefile
config.status: creating osi.pc
config.status: creating osi-uninstalled.pc
config.status: creating osi-unittests.pc
config.status: creating osi-unittests-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/Osi/config.h
config.status: creating src/Osi/config_osi.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Osi successful
configure: configuring in Clp
configure: running /bin/bash './configure' --prefix=/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' 'CXX=g++ -std=gnu++17' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' 'CPPFLAGS=-I/usr/local/include' 'LDFLAGS=-L/usr/local/lib' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-pc-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCLP_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2   -DCLP_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++ -std=gnu++17... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 14:6:13
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... not given: Package 'coindatasample', required by 'virtual:world', not found
checking for COIN-OR package Netlib... not given: Package 'coindatanetlib', required by 'virtual:world', not found
checking if user provides library for AMD... no
checking if user provides library for CHOLMOD... no
checking for COIN-OR package Glpk... not given: Package 'coinglpk', required by 'virtual:world', not found
checking for COIN-OR package Mumps... not given: Package 'coinmumps', required by 'virtual:world', not found
checking for COIN-OR package ASL... not given: Package 'coinasl', required by 'virtual:world', not found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking for doxygen doc'n for Osi ... ../Osi/doxydoc (tag)
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/OsiClp/Makefile
config.status: creating test/Makefile
config.status: creating clp.pc
config.status: creating clp-uninstalled.pc
config.status: creating osi-clp.pc
config.status: creating osi-clp-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_clp.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Clp successful
configure: configuring in Cgl
configure: running /bin/bash './configure' --prefix=/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' 'CXX=g++ -std=gnu++17' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' 'CPPFLAGS=-I/usr/local/include' 'LDFLAGS=-L/usr/local/lib' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-pc-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCGL_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2   -DCGL_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++ -std=gnu++17... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 10:4:9
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package Sample... not given: Package 'coindatasample', required by 'virtual:world', not found
checking for COIN-OR package OsiClp... yes: 1.16.6 
checking for COIN-OR package OsiCpx... not given: Package 'osi-cplex', required by 'virtual:world', not found
checking for COIN-OR package OsiGlpk... not given: Package 'osi-glpk', required by 'virtual:world', not found
checking for COIN-OR package OsiMsk... not given: Package 'osi-mosek', required by 'virtual:world', not found
checking for COIN-OR package OsiXpr... not given: Package 'osi-xpress', required by 'virtual:world', not found
checking for COIN-OR package OsiVol... not given: Package 'osi-vol', required by 'virtual:world', not found
checking for COIN-OR package OsiDyLP... not given: Package 'osi-dylp', required by 'virtual:world', not found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/CglAllDifferent/Makefile
config.status: creating src/CglClique/Makefile
config.status: creating src/CglDuplicateRow/Makefile
config.status: creating src/CglFlowCover/Makefile
config.status: creating src/CglGMI/Makefile
config.status: creating src/CglGomory/Makefile
config.status: creating src/CglKnapsackCover/Makefile
config.status: creating src/CglLandP/Makefile
config.status: creating src/CglLiftAndProject/Makefile
config.status: creating src/CglMixedIntegerRounding/Makefile
config.status: creating src/CglMixedIntegerRounding2/Makefile
config.status: creating src/CglOddHole/Makefile
config.status: creating src/CglPreProcess/Makefile
config.status: creating src/CglProbing/Makefile
config.status: creating src/CglRedSplit/Makefile
config.status: creating src/CglRedSplit2/Makefile
config.status: creating src/CglResidualCapacity/Makefile
config.status: creating src/CglSimpleRounding/Makefile
config.status: creating src/CglTwomir/Makefile
config.status: creating src/CglZeroHalf/Makefile
config.status: creating test/Makefile
config.status: creating cgl.pc
config.status: creating cgl-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_cgl.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Cgl successful
configure: configuring in SYMPHONY
configure: running /bin/bash './configure' --prefix=/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' 'CXX=g++ -std=gnu++17' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' 'CPPFLAGS=-I/usr/local/include' 'LDFLAGS=-L/usr/local/lib' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-pc-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DSYMPHONY_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2   -DSYMPHONY_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++ -std=gnu++17... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 9:10:6
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinDepend... yes: 2.10.6 0.107.4 
checking for COIN-OR package Clp... yes: 1.16.6 
checking for COIN-OR package DyLP... not given: Package 'osi-dylp', required by 'virtual:world', not found
checking for COIN-OR package Vol... not given: Package 'osi-vol', required by 'virtual:world', not found
checking for COIN-OR package Cgl... yes: 0.59.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... not given: Package 'coindatasample', required by 'virtual:world', not found
checking for COIN-OR package Netlib... not given: Package 'coindatanetlib', required by 'virtual:world', not found
checking for COIN-OR package Miplib3... not given: Package 'coindatamiplib3', required by 'virtual:world', not found
checking for COIN-OR package Cpx... not given: Package 'osi-cplex', required by 'virtual:world', not found
checking for COIN-OR package Glpk... not given: Package 'osi-glpk', required by 'virtual:world', not found
checking for COIN-OR package Msk... not given: Package 'osi-mosek', required by 'virtual:world', not found
checking for COIN-OR package Xpr... not given: Package 'osi-xpress', required by 'virtual:world', not found
checking for SYMPHONY default solver... Clp
checking whether to compile with gmpl... no
checking whether to compile application library... no
checking if user provides library for Pvm... no
checking whether compiler supports OpenMP... no
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/OsiSym/Makefile
config.status: creating test/Makefile
config.status: creating Examples/Makefile
config.status: creating Applications/Makefile.Applications
config.status: creating Applications/CNRP/Makefile
config.status: creating Applications/MATCH/Makefile
config.status: creating Applications/MCKP/Makefile
config.status: creating Applications/MPP/Makefile
config.status: creating Applications/SPP/Makefile
config.status: creating Applications/SPP+CUTS/Makefile
config.status: creating Applications/USER/Makefile
config.status: creating Applications/VRP/Makefile
config.status: creating symphony.pc
config.status: creating symphony-app.pc
config.status: creating symphony-uninstalled.pc
config.status: creating osi-sym.pc
config.status: creating osi-sym-uninstalled.pc
config.status: creating include/config.h
config.status: creating include/config_sym.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of SYMPHONY successful
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Main configuration of SYMPHONY successful
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
make[1]: Entering directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY'
Making all in CoinUtils
make[2]: Entering directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils'
Making all in src
make[3]: Entering directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
make  all-am
make[4]: Entering directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src'
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveSingleton.lo CoinPresolveSingleton.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveSingleton.cpp  -fPIC -DPIC -o CoinPresolveSingleton.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveSubst.lo CoinPresolveSubst.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveSubst.cpp  -fPIC -DPIC -o CoinPresolveSubst.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveTighten.lo CoinPresolveTighten.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveTighten.cpp  -fPIC -DPIC -o CoinPresolveTighten.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveTripleton.lo CoinPresolveTripleton.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveTripleton.cpp  -fPIC -DPIC -o CoinPresolveTripleton.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveUseless.lo CoinPresolveUseless.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveUseless.cpp  -fPIC -DPIC -o CoinPresolveUseless.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinPresolveZeros.lo CoinPresolveZeros.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinPresolveZeros.cpp  -fPIC -DPIC -o CoinPresolveZeros.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinRational.lo CoinRational.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinRational.cpp  -fPIC -DPIC -o CoinRational.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinSearchTree.lo CoinSearchTree.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinSearchTree.cpp  -fPIC -DPIC -o CoinSearchTree.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinShallowPackedVector.lo CoinShallowPackedVector.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinShallowPackedVector.cpp  -fPIC -DPIC -o CoinShallowPackedVector.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinSnapshot.lo CoinSnapshot.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinSnapshot.cpp  -fPIC -DPIC -o CoinSnapshot.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartBasis.lo CoinWarmStartBasis.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartBasis.cpp  -fPIC -DPIC -o CoinWarmStartBasis.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartVector.lo CoinWarmStartVector.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartVector.cpp  -fPIC -DPIC -o CoinWarmStartVector.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartDual.lo CoinWarmStartDual.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartDual.cpp  -fPIC -DPIC -o CoinWarmStartDual.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`   -I/usr/local/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinWarmStartPrimalDual.lo CoinWarmStartPrimalDual.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -w -g -O2 -DCOINUTILS_BUILD -c CoinWarmStartPrimalDual.cpp  -fPIC -DPIC -o CoinWarmStartPrimalDual.o
/bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++17  -w -g -O2   -DCOINUTILS_BUILD  -L/usr/local/lib -o libCoinUtils.la -rpath /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:6:10 CoinAlloc.lo CoinBuild.lo CoinDenseVector.lo CoinError.lo CoinFactorization1.lo CoinFactorization2.lo CoinFactorization3.lo CoinFactorization4.lo CoinSimpFactorization.lo CoinDenseFactorization.lo CoinOslFactorization.lo CoinOslFactorization2.lo CoinOslFactorization3.lo CoinFileIO.lo CoinFinite.lo CoinIndexedVector.lo CoinLpIO.lo CoinMessage.lo CoinMessageHandler.lo CoinModel.lo CoinStructuredModel.lo CoinModelUseful.lo CoinModelUseful2.lo CoinMpsIO.lo CoinPackedMatrix.lo CoinPackedVector.lo CoinPackedVectorBase.lo CoinParam.lo CoinParamUtils.lo CoinPostsolveMatrix.lo CoinPrePostsolveMatrix.lo CoinPresolveDoubleton.lo CoinPresolveDual.lo CoinPresolveDupcol.lo CoinPresolveEmpty.lo CoinPresolveFixed.lo CoinPresolveForcing.lo CoinPresolveHelperFunctions.lo CoinPresolveImpliedFree.lo CoinPresolveIsolated.lo CoinPresolveMatrix.lo CoinPresolvePsdebug.lo CoinPresolveMonitor.lo CoinPresolveSingleton.lo CoinPresolveSubst.lo CoinPresolveTighten.lo CoinPresolveTripleton.lo CoinPresolveUseless.lo CoinPresolveZeros.lo CoinRational.lo CoinSearchTree.lo CoinShallowPackedVector.lo CoinSnapshot.lo CoinWarmStartBasis.lo CoinWarmStartVector.lo CoinWarmStartDual.lo CoinWarmStartPrimalDual.lo -llapack -lblas -lm  
mkdir .libs
ar cru .libs/libCoinUtils.a  CoinAlloc.o CoinBuild.o CoinDenseVector.o CoinError.o CoinFactorization1.o CoinFactorization2.o CoinFactorization3.o CoinFactorization4.o CoinSimpFactorization.o CoinDenseFactorization.o CoinOslFactorization.o CoinOslFactorization2.o CoinOslFactorization3.o CoinFileIO.o CoinFinite.o CoinIndexedVector.o CoinLpIO.o CoinMessage.o CoinMessageHandler.o CoinModel.o CoinStructuredModel.o CoinModelUseful.o CoinModelUseful2.o CoinMpsIO.o CoinPackedMatrix.o CoinPackedVector.o CoinPackedVectorBase.o CoinParam.o CoinParamUtils.o CoinPostsolveMatrix.o CoinPrePostsolveMatrix.o CoinPresolveDoubleton.o CoinPresolveDual.o CoinPresolveDupcol.o CoinPresolveEmpty.o CoinPresolveFixed.o CoinPresolveForcing.o CoinPresolveHelperFunctions.o CoinPresolveImpliedFree.o CoinPresolveIsolated.o CoinPresolveMatrix.o CoinPresolvePsdebug.o CoinPresolveMonitor.o CoinPresolveSingleton.o CoinPresolveSubst.o CoinPresolveTighten.o CoinPresolveTripleton.o CoinPresolveUseless.o CoinPresolveZeros.o CoinRational.o CoinSearchTree.o CoinShallowPackedVector.o CoinSnapshot.o CoinWarmStartBasis.o CoinWarmStartVector.o CoinWarmStartDual.o CoinWarmStartPrimalDual.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libCoinUtils.a
creating libCoinUtils.la
(cd .libs && rm -f libCoinUtils.la && ln -s ../libCoinUtils.la libCoinUtils.la)
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Making all in Osi
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Making all in src/Osi
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make  all-am
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiBranchingObject.lo OsiBranchingObject.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiColCut.lo OsiColCut.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiCut.lo OsiCut.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiCuts.lo OsiCuts.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/usr/local/include -w -g -O2 -DOSI_BUILD -c OsiCuts.cpp  -fPIC -DPIC -o OsiCuts.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiNames.lo OsiNames.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiPresolve.lo OsiPresolve.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/usr/local/include -w -g -O2 -DOSI_BUILD -c OsiPresolve.cpp  -fPIC -DPIC -o OsiPresolve.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiRowCut.lo OsiRowCut.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/usr/local/include -w -g -O2 -DOSI_BUILD -c OsiRowCut.cpp  -fPIC -DPIC -o OsiRowCut.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiRowCutDebugger.lo OsiRowCutDebugger.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/usr/local/include -w -g -O2 -DOSI_BUILD -c OsiRowCutDebugger.cpp  -fPIC -DPIC -o OsiRowCutDebugger.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiSolverBranch.lo OsiSolverBranch.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/usr/local/include -w -g -O2 -DOSI_BUILD -c OsiSolverBranch.cpp  -fPIC -DPIC -o OsiSolverBranch.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiSolverInterface.lo OsiSolverInterface.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/usr/local/include -w -g -O2 -DOSI_BUILD -c OsiSolverInterface.cpp  -fPIC -DPIC -o OsiSolverInterface.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++ -std=gnu++17  -w -g -O2   -DOSI_BUILD  -L/usr/local/lib -o libOsi.la -rpath /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:4:12 OsiAuxInfo.lo OsiBranchingObject.lo OsiChooseVariable.lo OsiColCut.lo OsiCut.lo OsiCuts.lo OsiNames.lo OsiPresolve.lo OsiRowCut.lo OsiRowCutDebugger.lo OsiSolverBranch.lo OsiSolverInterface.lo /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   
mkdir .libs
ar cru .libs/libOsi.a  OsiAuxInfo.o OsiBranchingObject.o OsiChooseVariable.o OsiColCut.o OsiCut.o OsiCuts.o OsiNames.o OsiPresolve.o OsiRowCut.o OsiRowCutDebugger.o OsiSolverBranch.o OsiSolverInterface.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libOsi.a
creating libOsi.la
(cd .libs && rm -f libOsi.la && ln -s ../libOsi.la libOsi.la)
make[4]: Leaving directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi'
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Making all in src/OsiCommonTest
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -I/usr/local/include  -w -g -O2   -DOSI_BUILD -c -o OsiColCutTest.lo OsiColCutTest.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/usr/local/include -w -g -O2 -DOSI_BUILD -c OsiColCutTest.cpp  -fPIC -DPIC -o OsiColCutTest.o
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/bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++17  -w -g -O2   -DCLP_BUILD  -L/usr/local/lib -o libClp.la -rpath /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpCholeskyBase.lo ClpCholeskyDense.lo ClpConstraint.lo ClpConstraintLinear.lo ClpConstraintQuadratic.lo Clp_C_Interface.lo ClpDualRowDantzig.lo ClpDualRowPivot.lo ClpDualRowSteepest.lo ClpDummyMatrix.lo ClpDynamicExampleMatrix.lo ClpDynamicMatrix.lo ClpEventHandler.lo ClpFactorization.lo ClpGubDynamicMatrix.lo ClpGubMatrix.lo ClpHelperFunctions.lo ClpInterior.lo ClpLinearObjective.lo ClpMatrixBase.lo ClpMessage.lo ClpModel.lo ClpNetworkBasis.lo ClpNetworkMatrix.lo ClpNonLinearCost.lo ClpNode.lo ClpObjective.lo ClpPackedMatrix.lo ClpPlusMinusOneMatrix.lo ClpPredictorCorrector.lo ClpPdco.lo ClpPdcoBase.lo ClpLsqr.lo ClpPresolve.lo ClpPrimalColumnDantzig.lo ClpPrimalColumnPivot.lo ClpPrimalColumnSteepest.lo ClpQuadraticObjective.lo ClpSimplex.lo ClpSimplexDual.lo ClpSimplexNonlinear.lo ClpSimplexOther.lo ClpSimplexPrimal.lo ClpSolve.lo Idiot.lo IdiSolve.lo       /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   
mkdir .libs
ar cru .libs/libClp.a  ClpCholeskyBase.o ClpCholeskyDense.o ClpConstraint.o ClpConstraintLinear.o ClpConstraintQuadratic.o Clp_C_Interface.o ClpDualRowDantzig.o ClpDualRowPivot.o ClpDualRowSteepest.o ClpDummyMatrix.o ClpDynamicExampleMatrix.o ClpDynamicMatrix.o ClpEventHandler.o ClpFactorization.o ClpGubDynamicMatrix.o ClpGubMatrix.o ClpHelperFunctions.o ClpInterior.o ClpLinearObjective.o ClpMatrixBase.o ClpMessage.o ClpModel.o ClpNetworkBasis.o ClpNetworkMatrix.o ClpNonLinearCost.o ClpNode.o ClpObjective.o ClpPackedMatrix.o ClpPlusMinusOneMatrix.o ClpPredictorCorrector.o ClpPdco.o ClpPdcoBase.o ClpLsqr.o ClpPresolve.o ClpPrimalColumnDantzig.o ClpPrimalColumnPivot.o ClpPrimalColumnSteepest.o ClpQuadraticObjective.o ClpSimplex.o ClpSimplexDual.o ClpSimplexNonlinear.o ClpSimplexOther.o ClpSimplexPrimal.o ClpSolve.o Idiot.o IdiSolve.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib .libs/libClp.a
creating libClp.la
(cd .libs && rm -f libClp.la && ln -s ../libClp.la libClp.la)
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -DCOIN_HAS_CLP   -I/usr/local/include  -w -g -O2   -DCLP_BUILD -c -o ClpSolver.lo ClpSolver.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/usr/local/include -w -g -O2 -DCLP_BUILD -c ClpSolver.cpp  -fPIC -DPIC -o ClpSolver.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -DCOIN_HAS_CLP   -I/usr/local/include  -w -g -O2   -DCLP_BUILD -c -o CbcOrClpParam.lo CbcOrClpParam.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/usr/local/include -w -g -O2 -DCLP_BUILD -c CbcOrClpParam.cpp  -fPIC -DPIC -o CbcOrClpParam.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -DCOIN_HAS_CLP   -I/usr/local/include  -w -g -O2   -DCLP_BUILD -c -o Clp_ampl.lo Clp_ampl.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/usr/local/include -w -g -O2 -DCLP_BUILD -c Clp_ampl.cpp  -fPIC -DPIC -o Clp_ampl.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -DCOIN_HAS_CLP   -I/usr/local/include  -w -g -O2   -DCLP_BUILD -c -o MyEventHandler.lo MyEventHandler.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/usr/local/include -w -g -O2 -DCLP_BUILD -c MyEventHandler.cpp  -fPIC -DPIC -o MyEventHandler.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -DCOIN_HAS_CLP   -I/usr/local/include  -w -g -O2   -DCLP_BUILD -c -o MyMessageHandler.lo MyMessageHandler.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/usr/local/include -w -g -O2 -DCLP_BUILD -c MyMessageHandler.cpp  -fPIC -DPIC -o MyMessageHandler.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I`echo .`  -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src   -DCOIN_HAS_CLP   -I/usr/local/include  -w -g -O2   -DCLP_BUILD -c -o unitTest.lo unitTest.cpp
 g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I. -I/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/usr/local/include -w -g -O2 -DCLP_BUILD -c unitTest.cpp  -fPIC -DPIC -o unitTest.o
unitTest.cpp:2808:1: fatal error: error writing to /tmp/ccHM9uZF.s: No space left on device
 2808 | }
      | ^
compilation terminated.
make[4]: *** [Makefile:935: unitTest.lo] Error 1
make[4]: Leaving directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/Clp/src'
make[3]: *** [Makefile:693: all] Error 2
make[3]: Leaving directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/Clp/src'
make[2]: *** [Makefile:519: all-recursive] Error 1
make[2]: Leaving directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY/Clp'
make[1]: *** [Makefile:324: all-recursive] Error 1
make[1]: Leaving directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/lpsymphony/src/SYMPHONY'
make: *** [Makevars:14: SYMPHONY.ts] Error 2
ERROR: compilation failed for package ‘lpsymphony’
* removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/lpsymphony’
* restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/lpsymphony’